FiT-DB / Search/ Help/ Sample detail

Os01g0933400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Plastidic NADP-dependent malate dehydrogenase precursor (EC 1.1.1.82).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.24 (0.0142) R2 : 0.00793
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0571 (0.0299) R2dN8 : 0.0102 R2N8 : 0.00793
σ : 0.268
deviance : 32.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.45 0.237 9.31 -0.417 0.329 -0.0293 0.384 3.85 -0.01 19.5 29.98 731 -- --
26.17 0.238 9.26 0.00238 0.271 0.358 0.225 -- -0.000361 19.7 31.1 1917 -- --
25.74 0.236 9.3 -0.379 0.326 0.000369 -- 3.38 -0.00174 19.1 29.91 738 -- --
26.05 0.238 9.26 0.00923 0.266 0.352 -- -- 0.00238 19.1 31.2 1913 -- --
28.73 0.25 9.31 -0.478 -- -0.0495 -- 3.04 -0.00739 -- 30.18 1691 -- --
29.57 0.255 9.25 -0.0664 0.244 -- -0.143 -- 0.0547 18.6 -- -- -- --
29.61 0.255 9.25 -0.0649 0.244 -- -- -- 0.054 18.9 -- -- -- --
29.49 0.253 9.26 -0.00407 -- 0.316 -- -- -0.00541 -- 31.1 3109 -- --
26.05 0.238 9.26 -- 0.27 0.351 -- -- -0.000732 19.1 31.21 1913 -- --
32.72 0.267 9.25 -0.0701 -- -- -- -- 0.0493 -- -- -- -- --
29.72 0.255 9.25 -- 0.245 -- -- -- 0.0612 18.9 -- -- -- --
29.47 0.253 9.26 -- -- 0.316 -- -- -0.00367 -- 31.23 3149 -- --
32.85 0.268 9.24 -- -- -- -- -- 0.0571 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.99 temperature 30.0 270 < th dose independent rect. 6 19
2 22.07 atmosphere 995.0 30 > th dose independent rect. 9 18
3 22.08 temperature 30.0 270 < th dose independent rect. 7 17
7 22.21 atmosphere 995.0 30 > th dose dependent rect. 9 18
8 22.30 radiation 10.0 270 < th dose dependent rect. 8 17
9 22.32 humidity 70.0 270 > th dose independent rect. 15 10
14 22.40 precipitation 0.1 30 < th dose independent rect. 3 6
15 22.40 precipitation 0.1 30 < th dose dependent rect. 3 6
16 22.41 radiation 40.0 30 < th dose independent rect. 3 6
18 22.43 wind 7.0 30 < th dose independent rect. 3 6
20 22.43 temperature 10.0 30 > th dose independent rect. 3 6
22 22.43 temperature 30.0 30 < th dose independent rect. 3 6
23 22.43 humidity 50.0 30 > th dose independent rect. 3 6
25 22.43 atmosphere 995.0 30 > th dose independent rect. 3 6
26 22.43 atmosphere 1015.0 30 < th dose independent rect. 3 6
27 22.43 temperature 10.0 30 > th dose independent rect. 9 18
31 22.48 radiation 10.0 270 < th dose dependent rect. 14 11
44 22.52 temperature 10.0 1440 > th dose independent rect. 4 6
47 22.52 atmosphere 995.0 1440 > th dose independent rect. 4 6
48 22.52 atmosphere 1015.0 1440 < th dose independent rect. 4 6
49 22.52 wind 9.0 30 < th dose independent rect. 9 18
50 22.52 temperature 10.0 1440 > th dose independent rect. 10 18
57 22.55 humidity 50.0 4320 > th dose independent rect. 4 6
58 22.55 precipitation 0.1 30 < th dose independent rect. 9 18
59 22.55 precipitation 0.1 30 < th dose dependent rect. 9 18
63 22.58 temperature 30.0 90 < th dose independent rect. 9 18
66 22.61 temperature 30.0 270 < th dose independent rect. 17 8
70 22.64 wind 9.0 30 < th dose dependent rect. 3 6
74 22.65 radiation 10.0 270 < th dose independent rect. 15 10
79 22.70 humidity 50.0 30 > th dose independent rect. 9 18
83 22.72 humidity 50.0 30 > th dose dependent rect. 3 6
87 22.77 radiation 40.0 10 < th dose dependent rect. 3 6
93 22.84 humidity 50.0 270 > th dose independent rect. 6 19
115 22.99 atmosphere 995.0 30 > th dose dependent rect. 3 6
119 23.01 wind 9.0 30 < th dose dependent rect. 9 18
120 23.02 temperature 10.0 30 > th dose dependent rect. 3 6
127 23.04 temperature 30.0 270 < th dose independent rect. 6 7
149 23.12 radiation 10.0 270 < th dose independent rect. 9 16
155 23.13 wind 1.0 270 > th dose independent rect. 1 17
157 23.13 atmosphere 1015.0 30 < th dose independent rect. 9 18
158 23.14 wind 7.0 270 < th dose independent rect. 18 7
161 23.14 precipitation 0.1 270 < th dose independent rect. 1 17
162 23.14 precipitation 0.1 270 < th dose dependent rect. 1 17
177 23.18 temperature 10.0 270 > th dose independent rect. 18 7
179 23.18 atmosphere 995.0 270 > th dose independent rect. 18 7
184 23.18 temperature 10.0 270 > th dose independent rect. 1 17
185 23.18 atmosphere 1015.0 270 < th dose independent rect. 1 17
209 23.24 precipitation 0.1 270 < th dose independent rect. 12 18
212 23.24 precipitation 0.1 270 < th dose dependent rect. 12 18
215 23.25 wind 9.0 270 < th dose independent rect. 1 17
216 23.25 humidity 50.0 270 > th dose dependent rect. 23 8
221 23.27 precipitation 0.1 270 < th dose independent rect. 18 7
227 23.27 atmosphere 995.0 90 > th dose dependent rect. 20 7
228 23.27 precipitation 0.1 270 < th dose dependent rect. 18 7
234 23.28 temperature 10.0 270 > th dose independent rect. 6 6
237 23.28 atmosphere 995.0 270 > th dose independent rect. 6 6
239 23.28 atmosphere 1015.0 270 < th dose independent rect. 6 6
240 23.28 precipitation 0.1 270 < th dose independent rect. 6 6
249 23.28 temperature 10.0 270 > th dose independent rect. 12 18
251 23.28 precipitation 0.1 270 < th dose dependent rect. 6 6
258 23.29 atmosphere 995.0 270 > th dose independent rect. 6 19
262 23.30 radiation 1.0 270 < th dose independent rect. 1 5
267 23.31 radiation 20.0 270 < th dose independent rect. 24 7
271 23.32 humidity 70.0 270 > th dose independent rect. 24 7
274 23.32 radiation 10.0 270 < th dose dependent rect. 1 5
284 23.34 atmosphere 995.0 270 > th dose dependent rect. 18 7
288 23.35 wind 9.0 270 < th dose independent rect. 6 6
292 23.35 atmosphere 995.0 270 > th dose independent rect. 7 17
305 23.36 wind 1.0 270 > th dose independent rect. 12 18
309 23.37 wind 1.0 270 > th dose independent rect. 1 5
310 23.37 wind 9.0 270 < th dose independent rect. 24 7
311 23.37 temperature 10.0 270 > th dose independent rect. 24 7
313 23.37 temperature 30.0 270 < th dose independent rect. 24 7
314 23.37 humidity 50.0 270 > th dose independent rect. 24 7
316 23.37 atmosphere 995.0 270 > th dose independent rect. 24 7
317 23.37 atmosphere 1015.0 270 < th dose independent rect. 24 7
322 23.37 temperature 10.0 270 > th dose independent rect. 7 17
324 23.37 wind 9.0 270 < th dose independent rect. 6 19
326 23.37 atmosphere 995.0 10 > th dose dependent rect. 20 7
327 23.37 humidity 50.0 270 > th dose dependent rect. 7 17
329 23.38 atmosphere 1010.0 270 < th dose independent rect. 1 5
331 23.38 wind 9.0 270 < th dose independent rect. 7 17
332 23.38 wind 9.0 270 < th dose independent rect. 12 18
339 23.39 wind 7.0 270 < th dose independent rect. 1 5
341 23.39 temperature 10.0 270 > th dose independent rect. 1 5
343 23.39 temperature 30.0 270 < th dose independent rect. 1 5
344 23.39 humidity 50.0 270 > th dose independent rect. 1 5
347 23.39 atmosphere 995.0 270 > th dose independent rect. 1 5
354 23.39 wind 1.0 270 > th dose independent rect. 18 7
357 23.39 temperature 10.0 270 > th dose independent rect. 6 19
359 23.39 radiation 40.0 270 < th dose dependent rect. 24 7
364 23.40 humidity 50.0 270 > th dose independent rect. 6 6
367 23.40 humidity 90.0 270 < th dose independent rect. 11 8
369 23.40 wind 1.0 270 > th dose independent rect. 13 16
372 23.41 precipitation 0.1 270 < th dose independent rect. 24 7
377 23.41 precipitation 0.1 270 < th dose dependent rect. 24 7
380 23.42 precipitation 0.1 270 < th dose independent rect. 1 5
381 23.42 precipitation 0.1 270 < th dose dependent rect. 1 5
387 23.43 temperature 10.0 270 > th dose dependent rect. 11 9
482 23.50 temperature 10.0 1440 > th dose independent rect. 2 8
487 23.50 atmosphere 995.0 1440 > th dose independent rect. 2 8
493 23.50 temperature 10.0 1440 > th dose independent rect. 10 16
505 23.50 atmosphere 1015.0 270 < th dose dependent rect. 12 18
532 23.52 precipitation 0.1 270 < th dose independent rect. 11 9
536 23.52 precipitation 0.1 270 < th dose dependent rect. 11 9
559 23.54 temperature 10.0 270 > th dose independent rect. 9 1
560 23.54 atmosphere 995.0 270 > th dose independent rect. 9 1
561 23.54 atmosphere 1015.0 270 < th dose independent rect. 9 1
567 23.54 temperature 10.0 270 > th dose independent rect. 10 23
572 23.55 precipitation 0.1 270 < th dose independent rect. 9 1
577 23.55 temperature 30.0 270 < th dose independent rect. 20 15
579 23.55 precipitation 0.1 90 < th dose independent rect. 3 17
580 23.55 wind 1.0 30 > th dose independent rect. 9 18
582 23.55 precipitation 0.1 270 < th dose dependent rect. 9 1
583 23.55 atmosphere 1015.0 30 < th dose dependent rect. 3 6
588 23.55 precipitation 0.1 90 < th dose dependent rect. 3 17
590 23.56 wind 9.0 270 < th dose independent rect. 9 1
599 23.57 wind 7.0 90 < th dose independent rect. 20 7
620 23.58 humidity 50.0 270 > th dose independent rect. 9 1
622 23.58 wind 1.0 270 > th dose independent rect. 11 9
625 23.58 humidity 50.0 270 > th dose dependent rect. 17 8
636 23.60 precipitation 0.1 270 < th dose independent rect. 6 19
642 23.60 precipitation 0.1 270 < th dose dependent rect. 6 19
644 23.61 wind 7.0 10 < th dose independent rect. 20 7
690 23.64 temperature 15.0 10 > th dose independent rect. 14 19
693 23.64 temperature 15.0 30 > th dose independent rect. 12 21
702 23.65 radiation 1.0 10 > th dose independent rect. 9 5
706 23.65 precipitation 0.1 10 < th dose independent rect. 20 7
707 23.65 temperature 15.0 270 > th dose independent rect. 11 9
713 23.65 radiation 40.0 30 < th dose independent rect. 14 19
714 23.65 precipitation 0.1 30 < th dose independent rect. 14 19
718 23.65 precipitation 0.1 10 < th dose dependent rect. 20 7
726 23.65 atmosphere 1015.0 30 < th dose dependent rect. 14 19
727 23.65 precipitation 0.1 30 < th dose dependent rect. 14 19
728 23.66 temperature 10.0 1440 > th dose independent rect. 10 3
731 23.66 atmosphere 995.0 1440 > th dose independent rect. 10 3
732 23.66 temperature 10.0 10 > th dose independent rect. 9 5
734 23.66 atmosphere 995.0 10 > th dose independent rect. 9 5
735 23.66 atmosphere 1015.0 10 < th dose independent rect. 9 5
737 23.66 precipitation 0.1 10 < th dose independent rect. 9 5
739 23.66 temperature 10.0 10 > th dose independent rect. 20 7
740 23.66 temperature 10.0 90 > th dose independent rect. 20 7
741 23.66 temperature 30.0 10 < th dose independent rect. 20 7
742 23.66 temperature 30.0 90 < th dose independent rect. 20 7
744 23.66 humidity 50.0 10 > th dose independent rect. 20 7
747 23.66 humidity 50.0 90 > th dose independent rect. 20 7
750 23.66 atmosphere 995.0 10 > th dose independent rect. 20 7
751 23.66 atmosphere 995.0 90 > th dose independent rect. 20 7
752 23.66 radiation 1.0 10 < th dose independent rect. 20 7
757 23.66 radiation 1.0 90 < th dose independent rect. 20 7
765 23.66 temperature 10.0 10 > th dose independent rect. 3 17
767 23.66 temperature 10.0 90 > th dose independent rect. 3 17
768 23.66 atmosphere 1015.0 10 < th dose independent rect. 3 17
769 23.66 atmosphere 1015.0 90 < th dose independent rect. 3 17
771 23.66 temperature 10.0 1440 > th dose independent rect. 13 21
774 23.66 precipitation 0.1 10 < th dose dependent rect. 9 5
776 23.66 radiation 1.0 10 < th dose dependent rect. 20 7
781 23.66 radiation 1.0 90 < th dose dependent rect. 20 7
789 23.67 radiation 1.0 30 > th dose independent rect. 9 3
824 23.68 wind 1.0 30 > th dose independent rect. 3 6
829 23.68 precipitation 0.1 30 < th dose independent rect. 12 21
833 23.68 precipitation 0.1 30 < th dose dependent rect. 12 21
835 23.69 temperature 10.0 1440 > th dose independent rect. 10 5
841 23.69 precipitation 0.1 90 < th dose independent rect. 20 7
847 23.69 temperature 10.0 1440 > th dose independent rect. 15 19
853 23.69 radiation 1.0 1440 < th dose dependent rect. 21 7
854 23.69 precipitation 0.1 90 < th dose dependent rect. 20 7
861 23.70 temperature 10.0 30 > th dose independent rect. 9 3
863 23.70 atmosphere 995.0 30 > th dose independent rect. 9 3
864 23.70 atmosphere 1015.0 30 < th dose independent rect. 9 3
865 23.70 precipitation 0.1 30 < th dose independent rect. 9 3
881 23.70 radiation 1.0 270 > th dose independent rect. 6 6
900 23.70 wind 9.0 30 < th dose independent rect. 14 19
905 23.70 precipitation 0.1 270 < th dose independent rect. 10 23
906 23.70 precipitation 0.1 30 < th dose dependent rect. 9 3
921 23.70 precipitation 0.1 270 < th dose dependent rect. 10 23
937 23.71 wind 9.0 30 < th dose independent rect. 3 17
940 23.71 wind 9.0 30 < th dose independent rect. 12 21
942 23.71 wind 9.0 30 < th dose dependent rect. 20 7
945 23.72 temperature 30.0 270 < th dose independent rect. 9 1
969 23.73 atmosphere 1015.0 270 < th dose independent rect. 11 9
971 23.73 temperature 10.0 270 > th dose independent rect. 20 15
972 23.73 atmosphere 995.0 270 > th dose independent rect. 20 15