Os01g0930500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0930500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 297.8 | 0.811 | 7.15 | 6.37 | 0.287 | 99.9 | 0.104 | 208 | -0.279 | 6.88 | 14.97 | 6217 | -- | -- |
| 368.59 | 0.901 | 3.84 | -2.1 | 0.343 | 0.0373 | -0.35 | -- | -0.594 | 6.42 | 14.47 | 1812 | -- | -- |
| 297.75 | 0.804 | 7.15 | 6.36 | 0.29 | 100 | -- | 209 | -0.283 | 6.99 | 14.96 | 6204 | -- | -- |
| 340.77 | 0.86 | 3.75 | -1.91 | 0.444 | 1.11 | -- | -- | -0.477 | 6.31 | 19.3 | 2631 | -- | -- |
| 302.13 | 0.81 | 7.16 | 6.38 | -- | 100 | -- | 209 | -0.276 | -- | 14.97 | 6209 | -- | -- |
| 368.59 | 0.9 | 3.84 | -2.1 | 0.342 | -- | -0.35 | -- | -0.594 | 6.42 | -- | -- | -- | -- |
| 368.88 | 0.899 | 3.84 | -2.1 | 0.341 | -- | -- | -- | -0.592 | 6.6 | -- | -- | -- | -- |
| 335.52 | 0.853 | 3.75 | -1.3 | -- | 1.56 | -- | -- | -0.22 | -- | 19.5 | 3766 | -- | -- |
| 355.37 | 0.878 | 3.81 | -- | 0.511 | 2.01 | -- | -- | -0.17 | 7.05 | 19.4 | 12341 | -- | -- |
| 374.94 | 0.905 | 3.85 | -2.1 | -- | -- | -- | -- | -0.586 | -- | -- | -- | -- | -- |
| 485.51 | 1.03 | 3.79 | -- | 0.316 | -- | -- | -- | -0.358 | 6.99 | -- | -- | -- | -- |
| 336.09 | 0.854 | 3.71 | -- | -- | 2.39 | -- | -- | 0.0266 | -- | 17.6 | 14849 | -- | -- |
| 490.76 | 1.03 | 3.79 | -- | -- | -- | -- | -- | -0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 294.12 | wind | 3 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 2 | 294.31 | temperature | 15 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 3 | 294.69 | wind | 3 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 5 | 296.33 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 8 | 297.16 | wind | 5 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 13 | 298.76 | temperature | 15 | 4320 | > th | dose independent | rect. | 3 | 2 |
| 15 | 299.09 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 16 | 299.58 | wind | 3 | 4320 | < th | dose dependent | rect. | 3 | 6 |
| 27 | 301.43 | wind | 1 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 54 | 303.18 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 60 | 303.82 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 64 | 303.99 | temperature | 15 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 68 | 304.09 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 75 | 304.32 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 77 | 304.36 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 78 | 304.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 79 | 304.45 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 80 | 304.46 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 81 | 304.46 | temperature | 15 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 86 | 304.46 | temperature | 10 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 87 | 304.46 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 116 | 304.46 | wind | 9 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 117 | 304.46 | temperature | 15 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 122 | 304.46 | temperature | 10 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 152 | 304.61 | wind | 3 | 4320 | < th | dose dependent | rect. | 24 | 10 |
| 163 | 305.05 | temperature | 10 | 43200 | < th | dose dependent | rect. | 8 | 13 |
| 164 | 305.10 | temperature | 10 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 168 | 305.21 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 182 | 305.61 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 208 | 305.81 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 210 | 305.88 | wind | 9 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 231 | 306.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 242 | 306.68 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 258 | 306.68 | radiation | 40 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 293 | 307.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 325 | 307.83 | humidity | 70 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 353 | 308.23 | humidity | 90 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 365 | 308.40 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 403 | 308.97 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 423 | 309.29 | wind | 3 | 4320 | < th | dose dependent | sin | 7 | NA |
| 472 | 309.91 | wind | 3 | 14400 | < th | dose independent | sin | 4 | NA |
| 491 | 310.10 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 496 | 310.14 | wind | 3 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 508 | 310.24 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 520 | 310.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 549 | 310.61 | wind | 3 | 14400 | > th | dose independent | sin | 4 | NA |
| 561 | 310.73 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 18 |
| 571 | 310.77 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 20 |
| 589 | 310.89 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 637 | 311.16 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 21 |
| 656 | 311.30 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 684 | 311.41 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 18 |
| 695 | 311.44 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 17 |
| 701 | 311.46 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 15 |
| 717 | 311.51 | humidity | 90 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 724 | 311.52 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 733 | 311.55 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 19 |
| 739 | 311.57 | wind | 7 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 815 | 311.86 | temperature | 15 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 819 | 311.87 | temperature | 15 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 820 | 311.87 | wind | 3 | 14400 | < th | dose independent | rect. | 15 | 20 |
| 821 | 311.87 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 828 | 311.91 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 21 |
| 836 | 311.93 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 15 |
| 841 | 311.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 861 | 312.01 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 862 | 312.02 | wind | 3 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 880 | 312.08 | wind | 3 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 888 | 312.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 899 | 312.11 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 940 | 312.22 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 998 | 312.44 | wind | 3 | 14400 | > th | dose independent | rect. | 15 | 20 |