Os01g0930400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : K+ potassium transporter family protein.
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Os01g0930400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : K+ potassium transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.41 | 0.667 | 9.01 | 2.62 | 0.428 | -2.43 | -0.953 | 0.757 | 0.664 | 1.13 | 19.93 | 27 | 8.22 | 21.3 |
| 201.61 | 0.661 | 9.02 | 2.49 | 0.42 | -2.38 | -1.21 | -- | 0.629 | 1.43 | 19.98 | 18 | 8.2 | 21.4 |
| 202.82 | 0.663 | 8.98 | 2.81 | 0.406 | -2.5 | -- | 1.81 | 0.705 | 0.987 | 19.95 | 22 | 7.92 | 21.6 |
| 205.49 | 0.668 | 9.05 | 2.59 | 0.456 | -2.38 | -- | -- | 0.565 | 0.753 | 17.72 | 22 | 7.89 | 21.7 |
| 211.49 | 0.677 | 8.99 | 2.9 | -- | -2.63 | -- | 2.06 | 0.759 | -- | 20.3 | 25 | 7.9 | 21.6 |
| 302.11 | 0.815 | 9.09 | 2.04 | 1.43 | -- | -0.763 | -- | 0.308 | 2.89 | -- | -- | -- | -- |
| 304.09 | 0.817 | 9.08 | 2.05 | 1.42 | -- | -- | -- | 0.313 | 2.91 | -- | -- | -- | -- |
| 213.5 | 0.681 | 9 | 2.62 | -- | -2.72 | -- | -- | 0.67 | -- | 20.08 | 11 | 7.97 | 21.6 |
| 361.41 | 0.885 | 9.15 | -- | 0.951 | -1.69 | -- | -- | 0.18 | 1.4 | 6.346 | 14 | 7.94 | 21.7 |
| 420.85 | 0.959 | 9.08 | 2.12 | -- | -- | -- | -- | 0.349 | -- | -- | -- | -- | -- |
| 415.38 | 0.953 | 9.13 | -- | 1.46 | -- | -- | -- | 0.0839 | 2.91 | -- | -- | -- | -- |
| 388.48 | 0.918 | 9.08 | -- | -- | -2.25 | -- | -- | 0.359 | -- | 20.5 | 8 | 8.47 | 21.1 |
| 538.91 | 1.08 | 9.13 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 205.74 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 32 | 223.53 | humidity | 60 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 48 | 227.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 60 | 229.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 15 |
| 61 | 229.08 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 74 | 230.33 | humidity | 70 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 88 | 231.52 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 94 | 231.83 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 97 | 232.03 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 105 | 232.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 109 | 232.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 123 | 233.77 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 124 | 233.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 129 | 234.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 137 | 234.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 149 | 235.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 150 | 235.08 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 21 |
| 157 | 235.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 174 | 236.16 | temperature | 30 | 10 | < th | dose dependent | sin | 20 | NA |
| 188 | 236.49 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 14 |
| 211 | 237.18 | temperature | 10 | 10 | > th | dose dependent | sin | 20 | NA |
| 217 | 237.38 | temperature | 20 | 10 | > th | dose dependent | sin | 19 | NA |
| 248 | 238.06 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 271 | 238.46 | humidity | 70 | 10 | > th | dose dependent | sin | 21 | NA |
| 274 | 238.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 286 | 238.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 304 | 239.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 344 | 239.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 358 | 240.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 359 | 240.01 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 18 |
| 371 | 240.18 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 380 | 240.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 11 |
| 395 | 240.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 442 | 240.82 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 17 |
| 448 | 240.87 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 461 | 240.97 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 470 | 241.11 | temperature | 25 | 30 | < th | dose independent | rect. | 5 | 21 |
| 496 | 241.28 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 509 | 241.34 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 561 | 241.94 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 565 | 241.98 | humidity | 80 | 30 | > th | dose independent | rect. | 5 | 23 |
| 571 | 242.02 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 595 | 242.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 609 | 242.31 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 614 | 242.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 636 | 242.44 | humidity | 50 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 664 | 242.65 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 16 |
| 669 | 242.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 674 | 242.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 705 | 242.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 742 | 243.30 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 18 |
| 756 | 243.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 764 | 243.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 765 | 243.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 773 | 243.47 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 16 |
| 778 | 243.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 10 |
| 808 | 243.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 809 | 243.67 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 820 | 243.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 833 | 243.78 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 23 |
| 862 | 243.99 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 13 |
| 877 | 244.03 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 881 | 244.05 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 906 | 244.17 | humidity | 80 | 30 | > th | dose independent | rect. | 5 | 21 |
| 912 | 244.21 | temperature | 25 | 720 | > th | dose dependent | sin | 10 | NA |
| 941 | 244.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 947 | 244.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 995 | 244.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 14 |