Os01g0930300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
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Os01g0930300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.87 | 0.474 | 5.3 | -0.146 | 2.33 | -0.681 | 2.21 | -0.161 | 0.141 | 19.5 | 20.2 | 431 | -- | -- |
| 101.86 | 0.47 | 5.29 | -0.118 | 2.33 | -0.663 | 2.14 | -- | 0.15 | 19.5 | 20.36 | 465 | -- | -- |
| 113.36 | 0.496 | 5.27 | -0.0663 | 2.33 | -0.586 | -- | 0.55 | 0.19 | 19.5 | 20.43 | 464 | -- | -- |
| 114.02 | 0.497 | 5.29 | -0.177 | 2.35 | -0.599 | -- | -- | 0.168 | 19.5 | 20.99 | 523 | -- | -- |
| 384.68 | 0.918 | 5.24 | -0.354 | -- | -0.449 | -- | -0.168 | 0.0982 | -- | 22.01 | 1503 | -- | -- |
| 114.76 | 0.502 | 5.32 | -0.341 | 2.25 | -- | 2.06 | -- | 0.0144 | 19.5 | -- | -- | -- | -- |
| 126.48 | 0.527 | 5.32 | -0.389 | 2.25 | -- | -- | -- | 0.0187 | 19.5 | -- | -- | -- | -- |
| 384.86 | 0.918 | 5.24 | -0.31 | -- | -0.449 | -- | -- | 0.109 | -- | 22.01 | 1503 | -- | -- |
| 114.77 | 0.499 | 5.28 | -- | 2.36 | -0.634 | -- | -- | 0.197 | 19.5 | 20.9 | 523 | -- | -- |
| 398.07 | 0.932 | 5.27 | -0.424 | -- | -- | -- | -- | -0.0171 | -- | -- | -- | -- | -- |
| 130.47 | 0.534 | 5.31 | -- | 2.26 | -- | -- | -- | 0.062 | 19.5 | -- | -- | -- | -- |
| 387.32 | 0.92 | 5.23 | -- | -- | -0.48 | -- | -- | 0.151 | -- | 22.01 | 1503 | -- | -- |
| 402.81 | 0.937 | 5.26 | -- | -- | -- | -- | -- | 0.0299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.87 | temperature | 20 | 10 | > th | dose dependent | sin | 8 | NA |
| 7 | 96.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 9 | 96.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 41 | 98.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 72 | 99.60 | temperature | 25 | 10 | < th | dose dependent | sin | 5 | NA |
| 76 | 99.63 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 84 | 99.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 7 |
| 101 | 100.06 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 7 |
| 102 | 100.06 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 16 |
| 103 | 100.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 106 | 100.08 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 15 |
| 108 | 100.10 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 131 | 100.28 | temperature | 25 | 270 | < th | dose dependent | sin | 7 | NA |
| 138 | 100.33 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 21 |
| 148 | 100.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 174 | 100.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 213 | 100.86 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 228 | 101.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 253 | 101.15 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 18 |
| 258 | 101.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 323 | 101.50 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 333 | 101.53 | temperature | 20 | 30 | > th | dose independent | rect. | 19 | 17 |
| 416 | 101.85 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 23 |
| 423 | 101.88 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 17 |
| 426 | 101.89 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 1 |
| 456 | 102.01 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 12 |
| 458 | 102.02 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 461 | 102.03 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 14 |
| 498 | 102.17 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 551 | 102.33 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 16 |
| 552 | 102.33 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 23 |
| 608 | 102.45 | temperature | 20 | 30 | > th | dose independent | sin | 6 | NA |
| 637 | 102.52 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 8 |
| 644 | 102.54 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 13 |
| 739 | 102.84 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 8 |
| 780 | 102.93 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 922 | 103.23 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 924 | 103.23 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 925 | 103.24 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 7 |
| 947 | 103.27 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 10 |
| 983 | 103.33 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 19 |
| 984 | 103.33 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 21 |
| 996 | 103.36 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 998 | 103.36 | temperature | 20 | 270 | < th | dose dependent | rect. | 10 | 23 |