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Os01g0929200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.66 (0.0373) R2 : 0.614
β1 : -2.25 (0.139) R2dD : 0.24 R2D : 0.0422
β2 : 1.05 (0.0888) R2dC : 0.118 R2C : 0.0363
β3 : 0.91 (0.133) R2dE : 0.0419 R2E : -0.0448
β4 : 2.61 (0.341) R2dD*C : 0.05 R2D*C : -0.0169
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.34 (0.0804) R2dN8 : 0.321 R2N8 : 0.191
σ : 0.696
deviance : 223.07
__
_____
C
peak time of C : 22.9
E
wheather : atmosphere
threshold : 999
memory length : 5450
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.04 0.702 6.66 -2.24 1.05 0.879 2.61 0.19 -1.34 22.9 999 5450 -- --
223.07 0.696 6.66 -2.25 1.05 0.91 2.61 -- -1.34 22.9 999 5450 -- --
251.62 0.739 6.66 -2.34 1.04 0.888 -- 0.126 -1.35 23 999 5450 -- --
251.59 0.739 6.66 -2.36 1.03 0.926 -- -- -1.34 23 998.9 5444 -- --
317.8 0.83 6.64 -2.33 -- 0.836 -- 0.516 -1.35 -- 998.9 5050 -- --
245.79 0.735 6.68 -2.09 1.04 -- 2.65 -- -1.42 22.9 -- -- -- --
275.18 0.777 6.68 -2.2 1.02 -- -- -- -1.43 23 -- -- -- --
317.97 0.831 6.64 -2.33 -- 0.921 -- -- -1.34 -- 999 5050 -- --
393.42 0.924 6.61 -- 0.987 0.674 -- -- -1.11 22.9 1002 5678 -- --
340.42 0.862 6.66 -2.18 -- -- -- -- -1.42 -- -- -- -- --
402.66 0.939 6.63 -- 1.01 -- -- -- -1.19 22.8 -- -- -- --
456.75 0.995 6.58 -- -- 0.705 -- -- -1.11 -- 1002 5560 -- --
465.39 1.01 6.6 -- -- -- -- -- -1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 216.94 temperature 15.0 270 > th dose dependent rect. 17 7
2 217.19 temperature 20.0 270 > th dose independent rect. 4 20
4 217.78 temperature 25.0 90 < th dose dependent rect. 24 23
6 217.83 temperature 25.0 10 < th dose dependent rect. 24 22
9 218.33 temperature 20.0 270 > th dose independent rect. 18 16
38 220.33 precipitation 0.1 14400 > th dose dependent rect. 17 1
42 220.73 temperature 30.0 270 < th dose dependent rect. 12 17
49 221.03 temperature 10.0 90 > th dose dependent rect. 5 22
50 221.10 precipitation 0.1 14400 > th dose independent rect. 17 1
54 221.17 temperature 30.0 270 < th dose dependent rect. 23 6
61 221.36 radiation 10.0 14400 < th dose dependent rect. 19 8
63 221.52 temperature 30.0 10 < th dose dependent rect. 13 17
73 222.03 temperature 10.0 270 > th dose dependent rect. 18 15
77 222.13 wind 9.0 4320 > th dose dependent rect. 19 2
82 222.32 temperature 20.0 270 > th dose independent rect. 16 21
86 222.34 atmosphere 995.0 14400 < th dose independent rect. 17 2
89 222.35 atmosphere 995.0 14400 < th dose dependent rect. 17 2
113 222.54 wind 7.0 4320 < th dose independent rect. 20 1
115 222.56 temperature 15.0 30 > th dose dependent rect. 19 8
116 222.58 wind 7.0 4320 > th dose independent rect. 20 1
120 222.70 temperature 25.0 270 < th dose independent rect. 23 6
125 222.76 atmosphere 995.0 14400 > th dose independent rect. 18 2
127 222.78 precipitation 0.1 14400 < th dose independent rect. 17 1
128 222.78 precipitation 0.1 14400 < th dose dependent rect. 17 1
130 222.88 wind 9.0 4320 < th dose independent rect. 20 6
132 222.90 atmosphere 1000.0 4320 < th dose independent rect. 12 1
134 222.92 atmosphere 1000.0 4320 > th dose independent rect. 12 1
180 223.44 temperature 20.0 270 > th dose independent rect. 16 8
220 223.73 temperature 10.0 270 > th dose dependent rect. 5 19
222 223.76 atmosphere 1005.0 14400 > th dose independent rect. 6 1
228 223.82 atmosphere 1005.0 14400 < th dose independent rect. 6 1
229 223.82 temperature 20.0 10 > th dose independent rect. 6 21
238 223.85 atmosphere 995.0 14400 > th dose independent rect. 6 8
271 224.10 temperature 20.0 90 > th dose independent rect. 5 8
277 224.14 wind 9.0 4320 > th dose dependent rect. 19 9
278 224.14 temperature 10.0 10 > th dose dependent rect. 6 21
295 224.28 temperature 30.0 10 < th dose dependent rect. 12 21
326 224.48 temperature 25.0 270 < th dose independent rect. 1 1
354 224.65 temperature 20.0 10 > th dose independent rect. 19 18
370 224.71 atmosphere 995.0 14400 < th dose independent rect. 18 21
372 224.72 atmosphere 995.0 14400 > th dose independent rect. 18 21
376 224.74 atmosphere 995.0 14400 > th dose independent rect. 20 19
384 224.76 atmosphere 995.0 14400 > th dose independent rect. 22 17
391 224.80 atmosphere 995.0 14400 < th dose dependent rect. 2 15
392 224.81 atmosphere 995.0 14400 < th dose dependent sin 2 NA
400 224.86 atmosphere 995.0 14400 > th dose independent sin 5 NA
402 224.86 atmosphere 995.0 14400 < th dose dependent rect. 2 21
408 224.87 atmosphere 995.0 14400 < th dose dependent rect. 14 12
414 224.87 atmosphere 995.0 14400 < th dose dependent rect. 1 18
435 224.90 atmosphere 995.0 14400 < th dose independent sin 5 NA
436 224.90 temperature 20.0 10 > th dose independent rect. 19 8
438 224.90 temperature 20.0 270 > th dose dependent rect. 19 2
454 224.91 atmosphere 995.0 14400 < th dose independent rect. 1 14
466 224.93 atmosphere 995.0 14400 < th dose dependent sin 17 NA
476 224.95 atmosphere 995.0 14400 < th dose independent rect. 21 19
488 224.96 temperature 10.0 10 > th dose dependent rect. 6 18
500 224.98 wind 9.0 4320 > th dose independent rect. 19 9
533 225.02 atmosphere 1000.0 4320 < th dose independent rect. 20 1
534 225.02 temperature 25.0 90 < th dose independent rect. 3 2
557 225.05 atmosphere 1000.0 4320 < th dose dependent rect. 10 3
564 225.07 wind 9.0 4320 > th dose independent rect. 19 7
593 225.10 atmosphere 995.0 14400 < th dose dependent no NA NA
654 225.14 temperature 25.0 10 < th dose independent rect. 3 3
710 225.22 temperature 25.0 90 < th dose dependent rect. 24 11
741 225.27 atmosphere 995.0 14400 < th dose dependent rect. 5 10
761 225.31 temperature 25.0 270 < th dose independent rect. 12 17
763 225.32 atmosphere 995.0 14400 > th dose independent sin 12 NA
764 225.32 temperature 25.0 10 < th dose independent rect. 3 5
769 225.32 atmosphere 1000.0 4320 < th dose independent rect. 8 13
776 225.34 atmosphere 1000.0 4320 < th dose independent sin 1 NA
802 225.38 atmosphere 995.0 14400 < th dose independent sin 12 NA
854 225.44 atmosphere 995.0 14400 > th dose independent rect. 15 23
866 225.46 atmosphere 995.0 14400 > th dose independent rect. 18 7
884 225.48 atmosphere 995.0 14400 < th dose independent no NA NA
885 225.48 atmosphere 995.0 14400 < th dose independent rect. 14 16
915 225.48 atmosphere 995.0 14400 > th dose independent rect. 10 23
929 225.49 atmosphere 995.0 14400 > th dose independent no NA NA
939 225.49 atmosphere 995.0 14400 > th dose independent rect. 12 23
954 225.51 atmosphere 995.0 14400 > th dose independent rect. 12 20
971 225.52 atmosphere 995.0 14400 > th dose independent rect. 5 23
996 225.54 temperature 25.0 10 < th dose dependent sin 5 NA