Os01g0928400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0928400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.68 | 0.747 | 4.64 | 2.36 | 0.822 | 1.86 | 1.62 | 0.389 | 0.134 | 2.02 | 25.22 | 1229 | -- | -- |
| 252.58 | 0.74 | 4.64 | 2.27 | 0.822 | 1.88 | 1.63 | -- | 0.15 | 2.08 | 25.57 | 1215 | -- | -- |
| 262.37 | 0.754 | 4.63 | 2.37 | 0.817 | 1.86 | -- | 0.644 | 0.151 | 2.02 | 25.44 | 1214 | -- | -- |
| 262.56 | 0.755 | 4.64 | 2.22 | 0.826 | 1.89 | -- | -- | 0.164 | 1.94 | 25.81 | 1222 | -- | -- |
| 295.74 | 0.801 | 4.64 | 2.46 | -- | 2.23 | -- | 1.37 | 0.0821 | -- | 24.31 | 1136 | -- | -- |
| 383.28 | 0.918 | 4.61 | 2.87 | 1.17 | -- | 2.04 | -- | 0.307 | 1.8 | -- | -- | -- | -- |
| 399.48 | 0.936 | 4.62 | 2.81 | 1.16 | -- | -- | -- | 0.296 | 1.7 | -- | -- | -- | -- |
| 296.4 | 0.802 | 4.67 | 2.15 | -- | 2.34 | -- | -- | 0.0231 | -- | 24.55 | 1140 | -- | -- |
| 380.5 | 0.909 | 4.75 | -- | 0.731 | 2.51 | -- | -- | -0.312 | 2.05 | 23.95 | 1223 | -- | -- |
| 482.08 | 1.03 | 4.6 | 2.86 | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
| 607.59 | 1.15 | 4.69 | -- | 1.22 | -- | -- | -- | -0.0171 | 1.77 | -- | -- | -- | -- |
| 408.56 | 0.941 | 4.75 | -- | -- | 2.82 | -- | -- | -0.326 | -- | 24 | 1154 | -- | -- |
| 697.43 | 1.23 | 4.67 | -- | -- | -- | -- | -- | 0.00486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 255.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 2 | 256.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 3 | 257.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 4 | 257.70 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 7 | 257.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 8 | 258.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 42 | 258.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 57 | 258.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 58 | 258.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 80 | 258.90 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 83 | 258.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 84 | 258.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 97 | 259.09 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 100 | 259.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 115 | 259.19 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 129 | 259.31 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 149 | 259.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 203 | 259.75 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 216 | 259.84 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 229 | 260.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 235 | 260.06 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 257 | 260.28 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 325 | 260.50 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 526 | 260.95 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 552 | 261.04 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 604 | 261.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 608 | 261.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 667 | 261.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 668 | 261.68 | radiation | 30 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 677 | 261.72 | radiation | 30 | 1440 | < th | dose independent | rect. | 20 | 12 |
| 696 | 261.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 749 | 262.02 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 844 | 262.03 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 848 | 262.05 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 880 | 262.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 956 | 262.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 958 | 262.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 961 | 262.38 | temperature | 30 | 1440 | > th | dose independent | sin | 21 | NA |
| 967 | 262.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 968 | 262.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 981 | 262.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 984 | 262.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |