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Os01g0928300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Prefoldin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0218) R2 : 0.489
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.15 (0.0571) R2dC : 0.455 R2C : 0.433
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.285 (0.046) R2dN8 : 0.0556 R2N8 : 0.0344
σ : 0.412
deviance : 77.51
__
_____
C
peak time of C : 17.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.49 0.344 10.4 -0.541 1.12 0.27 0.102 -6.09 0.111 17.5 26.09 3999 -- --
63.14 0.37 10.2 0.795 1.15 -0.205 0.289 -- 0.394 17.4 23.92 3226 -- --
53.36 0.34 10.4 -0.515 1.13 0.298 -- -6.19 0.125 17.5 26.67 4021 -- --
58.5 0.356 10.3 0.76 1.13 -0.382 -- -- 0.289 17.6 30.3 1184 -- --
118.45 0.507 10.4 -0.771 -- 0.31 -- -7.48 0.071 -- 26.87 4031 -- --
65.58 0.38 10.3 0.671 1.16 -- 0.172 -- 0.359 17.4 -- -- -- --
65.65 0.379 10.3 0.671 1.16 -- -- -- 0.359 17.4 -- -- -- --
124.59 0.522 10.2 0.546 -- 0.762 -- -- 0.326 -- 26.87 4031 -- --
73.57 0.399 10.3 -- 1.12 -0.273 -- -- 0.246 17.6 30.93 1172 -- --
135.65 0.544 10.2 0.632 -- -- -- -- 0.331 -- -- -- -- --
77.51 0.412 10.3 -- 1.15 -- -- -- 0.285 17.5 -- -- -- --
126.01 0.525 10.3 -- -- 1.15 -- -- 0.129 -- 5.744 47520 -- --
146.19 0.564 10.3 -- -- -- -- -- 0.261 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.50 precipitation 0.1 270 < th dose independent rect. 3 2
2 50.50 precipitation 0.1 270 < th dose dependent rect. 3 2
3 50.56 wind 5.0 270 < th dose independent rect. 3 2
7 50.85 wind 5.0 90 < th dose independent rect. 3 5
10 51.11 precipitation 0.1 90 < th dose independent rect. 3 5
11 51.11 precipitation 0.1 90 < th dose dependent rect. 3 5
12 51.14 radiation 30.0 90 < th dose independent rect. 3 6
16 51.30 wind 9.0 270 < th dose dependent rect. 3 3
21 51.43 wind 5.0 270 < th dose independent rect. 1 6
23 51.48 wind 9.0 90 < th dose dependent rect. 3 6
24 51.50 radiation 1.0 270 < th dose dependent rect. 3 2
26 51.52 temperature 30.0 90 < th dose independent rect. 3 6
27 51.53 atmosphere 1010.0 270 < th dose independent rect. 3 3
31 51.56 temperature 10.0 270 > th dose independent rect. 3 2
33 51.56 temperature 30.0 270 < th dose independent rect. 3 2
34 51.56 humidity 50.0 270 > th dose independent rect. 3 2
37 51.56 atmosphere 995.0 270 > th dose independent rect. 3 2
40 51.56 radiation 20.0 270 < th dose independent rect. 3 2
43 51.56 temperature 10.0 270 > th dose independent rect. 5 22
45 51.57 radiation 30.0 270 < th dose dependent rect. 3 2
63 51.61 radiation 1.0 270 < th dose independent rect. 3 2
65 51.65 atmosphere 995.0 90 > th dose independent rect. 8 19
67 51.66 humidity 60.0 90 > th dose independent rect. 3 6
69 51.68 temperature 10.0 90 > th dose independent rect. 3 5
74 51.68 atmosphere 995.0 90 > th dose independent rect. 3 5
75 51.68 atmosphere 1015.0 90 < th dose independent rect. 3 5
76 51.68 temperature 10.0 90 > th dose independent rect. 8 19
78 51.71 atmosphere 1000.0 270 > th dose independent rect. 17 9
80 51.72 wind 9.0 90 < th dose dependent rect. 8 19
91 51.78 precipitation 0.1 10 < th dose independent rect. 3 6
92 51.78 precipitation 0.1 10 < th dose dependent rect. 3 6
94 51.79 wind 9.0 90 < th dose independent rect. 8 19
95 51.79 atmosphere 1015.0 270 < th dose dependent rect. 3 2
96 51.80 atmosphere 995.0 270 > th dose independent rect. 6 21
102 51.83 atmosphere 995.0 10 > th dose independent rect. 9 19
103 51.83 wind 9.0 270 < th dose independent rect. 6 21
108 51.89 precipitation 0.1 270 < th dose independent rect. 1 6
110 51.89 precipitation 0.1 270 < th dose dependent rect. 1 6
125 51.99 temperature 10.0 10 > th dose independent rect. 4 5
127 51.99 temperature 30.0 10 < th dose independent rect. 4 5
128 51.99 humidity 50.0 10 > th dose independent rect. 4 5
130 51.99 atmosphere 995.0 10 > th dose independent rect. 4 5
131 51.99 atmosphere 1015.0 10 < th dose independent rect. 4 5
133 51.99 temperature 10.0 10 > th dose independent rect. 9 19
136 52.00 wind 9.0 10 < th dose dependent rect. 4 5
151 52.11 wind 9.0 10 < th dose independent rect. 9 19
152 52.12 precipitation 0.1 270 < th dose independent rect. 2 15
153 52.12 precipitation 0.1 270 < th dose dependent rect. 2 15
170 52.17 precipitation 0.1 10 < th dose independent rect. 14 19
172 52.17 precipitation 0.1 10 < th dose dependent rect. 14 19
178 52.25 precipitation 0.1 90 < th dose independent rect. 8 19
180 52.25 precipitation 0.1 90 < th dose dependent rect. 8 19
196 52.39 humidity 50.0 270 > th dose dependent rect. 3 2
216 52.57 temperature 10.0 270 > th dose dependent rect. 3 3
217 52.58 temperature 10.0 270 > th dose independent rect. 1 6
219 52.58 temperature 30.0 270 < th dose independent rect. 1 6
220 52.58 humidity 50.0 270 > th dose independent rect. 1 6
222 52.58 atmosphere 995.0 270 > th dose independent rect. 1 6
223 52.58 atmosphere 1015.0 270 < th dose independent rect. 1 6
224 52.58 radiation 30.0 270 < th dose independent rect. 1 6
274 52.77 precipitation 0.1 270 < th dose independent rect. 6 21
275 52.77 precipitation 0.1 270 < th dose dependent rect. 6 21
289 52.78 temperature 10.0 10 > th dose independent rect. 9 5
291 52.78 atmosphere 995.0 10 > th dose independent rect. 9 5
292 52.78 atmosphere 1015.0 10 < th dose independent rect. 9 5
294 52.78 precipitation 0.1 10 < th dose independent rect. 9 5
295 52.78 temperature 10.0 10 > th dose independent rect. 14 19
297 52.78 precipitation 0.1 10 < th dose dependent rect. 9 5
298 52.79 radiation 10.0 270 < th dose independent rect. 17 9
299 52.79 wind 9.0 10 < th dose independent rect. 14 19
317 52.82 radiation 1.0 10 > th dose independent rect. 9 5
319 52.84 temperature 10.0 270 > th dose independent rect. 17 9
323 52.84 wind 9.0 270 < th dose independent rect. 2 15
324 52.84 temperature 10.0 270 > th dose independent rect. 2 15
325 52.84 atmosphere 1015.0 270 < th dose independent rect. 2 15
329 52.86 atmosphere 1015.0 90 < th dose dependent rect. 3 5
338 52.89 wind 9.0 10 < th dose independent rect. 9 5
346 52.90 wind 9.0 270 < th dose independent rect. 17 9
348 52.90 temperature 10.0 90 > th dose dependent rect. 3 5
354 52.93 radiation 40.0 270 < th dose dependent rect. 17 9
358 52.96 temperature 10.0 10 > th dose dependent rect. 4 5
359 52.97 temperature 10.0 1440 > th dose independent rect. 10 5
362 52.97 temperature 10.0 1440 > th dose independent rect. 15 19
366 52.98 radiation 1.0 270 > th dose independent rect. 9 1
369 52.99 precipitation 0.1 10 < th dose independent rect. 9 18
372 52.99 precipitation 0.1 10 < th dose dependent rect. 9 18
374 53.01 atmosphere 1015.0 90 < th dose independent rect. 8 19
376 53.02 temperature 30.0 270 < th dose dependent rect. 3 2
383 53.05 temperature 15.0 270 > th dose independent rect. 9 1
395 53.10 atmosphere 1000.0 30 > th dose independent rect. 20 8
416 53.20 radiation 40.0 30 < th dose independent rect. 14 19
417 53.20 radiation 1.0 270 < th dose dependent rect. 3 8
423 53.22 humidity 90.0 10 < th dose independent rect. 9 5
426 53.23 humidity 50.0 270 > th dose independent rect. 17 9
430 53.24 wind 1.0 30 > th dose independent rect. 9 5
435 53.25 precipitation 0.1 270 < th dose independent rect. 10 23
437 53.25 humidity 50.0 90 > th dose dependent rect. 3 6
438 53.25 precipitation 0.1 270 < th dose dependent rect. 10 23
440 53.26 precipitation 0.1 270 < th dose independent rect. 13 17
443 53.26 precipitation 0.1 270 < th dose dependent rect. 13 17
446 53.28 atmosphere 1015.0 10 < th dose independent rect. 9 19
448 53.29 wind 9.0 270 < th dose independent rect. 9 1
449 53.29 wind 9.0 270 < th dose dependent rect. 9 1
450 53.30 precipitation 0.1 270 < th dose independent rect. 9 1
452 53.30 precipitation 0.1 270 < th dose dependent rect. 9 1
453 53.31 temperature 10.0 1440 > th dose independent rect. 4 6
456 53.31 atmosphere 995.0 1440 > th dose independent rect. 4 6
457 53.31 atmosphere 1015.0 1440 < th dose independent rect. 4 6
458 53.31 temperature 10.0 1440 > th dose independent rect. 10 18
489 53.35 temperature 10.0 10 > th dose dependent rect. 9 19
491 53.36 atmosphere 995.0 270 > th dose independent rect. 9 1
492 53.36 atmosphere 1015.0 270 < th dose independent rect. 9 1
496 53.36 temperature 10.0 270 > th dose independent rect. 10 23
519 53.44 humidity 50.0 270 > th dose independent rect. 9 1
520 53.44 humidity 50.0 10 > th dose independent rect. 14 19
522 53.44 precipitation 0.1 270 < th dose independent rect. 11 20
524 53.44 precipitation 0.1 270 < th dose dependent rect. 11 20
530 53.48 wind 9.0 270 < th dose dependent rect. 7 5
531 53.49 precipitation 0.1 270 < th dose independent rect. 17 9
533 53.49 precipitation 0.1 270 < th dose dependent rect. 17 9
536 53.50 temperature 15.0 270 > th dose independent rect. 6 6
545 53.51 temperature 10.0 10 > th dose dependent rect. 9 5
576 53.60 radiation 1.0 270 < th dose dependent rect. 3 14
583 53.62 wind 9.0 270 < th dose dependent rect. 6 20
631 53.74 humidity 50.0 270 > th dose dependent rect. 18 8
645 53.75 atmosphere 995.0 270 > th dose dependent rect. 17 9
652 53.77 temperature 10.0 270 > th dose dependent rect. 9 1
657 53.80 precipitation 0.1 270 < th dose independent rect. 6 7
659 53.80 wind 9.0 270 < th dose independent rect. 10 23
662 53.80 precipitation 0.1 270 < th dose dependent rect. 6 7
682 53.83 atmosphere 995.0 270 > th dose independent rect. 6 7
683 53.83 atmosphere 1015.0 270 < th dose independent rect. 6 7
692 53.85 wind 9.0 270 < th dose independent rect. 6 6
702 53.86 radiation 1.0 270 < th dose independent rect. 3 8
705 53.87 radiation 1.0 270 > th dose independent rect. 7 4
737 53.93 wind 9.0 270 < th dose independent rect. 11 20
759 53.99 wind 9.0 270 < th dose independent rect. 7 4
764 54.00 precipitation 0.1 270 < th dose independent rect. 7 4
765 54.00 precipitation 0.1 270 < th dose dependent rect. 7 4
768 54.00 temperature 25.0 4320 > th dose dependent rect. 17 6
775 54.03 atmosphere 995.0 270 > th dose independent rect. 7 4
776 54.03 atmosphere 1015.0 270 < th dose independent rect. 7 4
783 54.03 temperature 10.0 270 > th dose independent rect. 11 20
785 54.03 temperature 25.0 4320 > th dose dependent rect. 17 2
793 54.04 radiation 1.0 30 > th dose independent rect. 14 19
794 54.04 temperature 25.0 4320 > th dose dependent rect. 17 4
842 54.11 atmosphere 995.0 10 > th dose independent rect. 14 19
849 54.13 humidity 50.0 270 > th dose independent rect. 7 4
856 54.14 atmosphere 1015.0 270 < th dose independent rect. 6 20
859 54.15 wind 1.0 270 > th dose independent rect. 9 1
902 54.22 wind 1.0 270 > th dose independent rect. 1 6
910 54.22 radiation 20.0 4320 < th dose independent rect. 16 18
942 54.24 radiation 20.0 1440 < th dose independent rect. 8 7
949 54.25 humidity 50.0 270 > th dose independent rect. 6 6
971 54.28 radiation 20.0 4320 < th dose independent sin 11 NA
985 54.30 wind 1.0 270 > th dose independent rect. 3 2
991 54.32 radiation 20.0 1440 < th dose independent rect. 11 2
1000 54.32 atmosphere 1015.0 10 < th dose independent rect. 14 19