Os01g0927500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os01g0927500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.98 | 0.329 | 8.71 | 0.438 | 0.499 | -0.462 | 0.367 | 0.18 | 0.0283 | 2.32 | 20.77 | 573 | -- | -- |
| 49.05 | 0.326 | 8.71 | 0.396 | 0.503 | -0.467 | 0.396 | -- | 0.04 | 2.2 | 21.4 | 630 | -- | -- |
| 49.37 | 0.327 | 8.71 | 0.418 | 0.511 | -0.466 | -- | 0.128 | 0.0314 | 2.48 | 20.9 | 609 | -- | -- |
| 49.42 | 0.327 | 8.72 | 0.387 | 0.505 | -0.467 | -- | -- | 0.0215 | 2.5 | 20.9 | 601 | -- | -- |
| 61.33 | 0.365 | 8.72 | 0.361 | -- | -0.541 | -- | -0.205 | 0.0177 | -- | 20.6 | 234 | -- | -- |
| 56.35 | 0.352 | 8.74 | 0.226 | 0.508 | -- | 0.353 | -- | -0.0922 | 2.85 | -- | -- | -- | -- |
| 56.73 | 0.353 | 8.74 | 0.218 | 0.513 | -- | -- | -- | -0.0946 | 3.08 | -- | -- | -- | -- |
| 61.48 | 0.365 | 8.71 | 0.395 | -- | -0.525 | -- | -- | 0.023 | -- | 20.6 | 239 | -- | -- |
| 52.61 | 0.338 | 8.71 | -- | 0.514 | -0.355 | -- | -- | 4e-04 | 2.27 | 22.1 | 759 | -- | -- |
| 71.76 | 0.396 | 8.74 | 0.24 | -- | -- | -- | -- | -0.0812 | -- | -- | -- | -- | -- |
| 57.98 | 0.356 | 8.75 | -- | 0.517 | -- | -- | -- | -0.119 | 3.08 | -- | -- | -- | -- |
| 64.88 | 0.375 | 8.72 | -- | -- | -0.368 | -- | -- | 0.00182 | -- | 22.39 | 291 | -- | -- |
| 73.27 | 0.4 | 8.74 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.22 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 5 | 43.49 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 17 | 43.83 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 24 | 43.92 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 30 | 43.95 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 36 | 44.01 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 60 | 44.18 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 99 | 44.40 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 113 | 44.45 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 121 | 44.47 | wind | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 125 | 44.48 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 133 | 44.50 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 138 | 44.51 | wind | 3 | 14400 | < th | dose dependent | sin | 9 | NA |
| 152 | 44.55 | wind | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 161 | 44.57 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 198 | 44.66 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 235 | 44.76 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 243 | 44.77 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 268 | 44.81 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 11 |
| 299 | 44.88 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 389 | 45.04 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 393 | 45.05 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 412 | 45.07 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 418 | 45.08 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 457 | 45.14 | humidity | 50 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 608 | 45.36 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 647 | 45.41 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 748 | 45.56 | wind | 1 | 14400 | > th | dose dependent | sin | 10 | NA |
| 813 | 45.67 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 820 | 45.68 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 827 | 45.69 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 21 |
| 831 | 45.70 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 891 | 45.79 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 3 |