Os01g0927400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0927400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.17 | 0.221 | 7.68 | 0.826 | 0.223 | -0.563 | -0.0451 | 0.455 | 0.264 | 19.7 | 23.81 | 89 | -- | -- |
| 22.42 | 0.221 | 7.67 | 0.883 | 0.221 | -0.654 | -0.0328 | -- | 0.285 | 19.7 | 23.03 | 95 | -- | -- |
| 22.17 | 0.219 | 7.68 | 0.833 | 0.224 | -0.578 | -- | 0.432 | 0.27 | 19.7 | 23.44 | 91 | -- | -- |
| 22.42 | 0.221 | 7.67 | 0.882 | 0.224 | -0.666 | -- | -- | 0.284 | 19.7 | 22.94 | 95 | -- | -- |
| 24.19 | 0.229 | 7.68 | 0.798 | -- | -0.545 | -- | 0.51 | 0.224 | -- | 26.3 | 134 | -- | -- |
| 27.54 | 0.246 | 7.65 | 1.02 | 0.234 | -- | -0.109 | -- | 0.369 | 18.2 | -- | -- | -- | -- |
| 27.57 | 0.246 | 7.65 | 1.02 | 0.234 | -- | -- | -- | 0.369 | 18.3 | -- | -- | -- | -- |
| 24.63 | 0.231 | 7.67 | 0.878 | -- | -0.576 | -- | -- | 0.243 | -- | 26.17 | 134 | -- | -- |
| 40.98 | 0.298 | 7.71 | -- | 0.235 | -0.956 | -- | -- | 0.109 | 21 | 24.08 | 102 | -- | -- |
| 30.41 | 0.258 | 7.65 | 1.02 | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
| 55.17 | 0.347 | 7.68 | -- | 0.22 | -- | -- | -- | 0.255 | 18.6 | -- | -- | -- | -- |
| 43.08 | 0.306 | 7.71 | -- | -- | -0.89 | -- | -- | 0.0876 | -- | 25.88 | 213 | -- | -- |
| 57.7 | 0.355 | 7.67 | -- | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.17 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 5 | 22.23 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 9 | 22.25 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 14 | 22.28 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 15 | 22.29 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 17 | 22.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 24 | 22.31 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 27 | 22.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 28 | 22.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 39 | 22.34 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 42 | 22.35 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 23 |
| 78 | 22.40 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 79 | 22.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 95 | 22.44 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 99 | 22.45 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 20 |
| 117 | 22.49 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 21 |
| 143 | 22.60 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 15 |
| 157 | 22.62 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 22 |
| 158 | 22.62 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 23 |
| 168 | 22.63 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 23 |
| 172 | 22.64 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 19 |
| 173 | 22.64 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 19 |
| 184 | 22.65 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 17 |
| 186 | 22.65 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 20 |
| 207 | 22.67 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 22 |
| 227 | 22.71 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 23 |
| 236 | 22.72 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 252 | 22.74 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 16 |
| 258 | 22.74 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 262 | 22.75 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 22 |
| 265 | 22.75 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 266 | 22.76 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 271 | 22.76 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 274 | 22.76 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 277 | 22.77 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 284 | 22.78 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |
| 294 | 22.80 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 301 | 22.80 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 23 |
| 313 | 22.81 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 314 | 22.81 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 337 | 22.86 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 341 | 22.87 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 365 | 22.90 | temperature | 20 | 10 | > th | dose independent | sin | 8 | NA |
| 382 | 22.91 | temperature | 20 | 10 | > th | dose independent | rect. | 5 | 23 |
| 399 | 22.94 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 21 |
| 436 | 22.99 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 460 | 23.03 | temperature | 20 | 10 | < th | dose independent | sin | 8 | NA |
| 464 | 23.03 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 23 |
| 487 | 23.06 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 16 |
| 488 | 23.06 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 18 |
| 495 | 23.07 | temperature | 20 | 90 | > th | dose independent | sin | 9 | NA |
| 521 | 23.11 | temperature | 20 | 90 | < th | dose independent | sin | 9 | NA |
| 535 | 23.14 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 23 |
| 594 | 23.18 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 661 | 23.24 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 688 | 23.25 | temperature | 30 | 90 | < th | dose dependent | sin | 10 | NA |
| 689 | 23.25 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 724 | 23.27 | temperature | 20 | 90 | < th | dose dependent | sin | 7 | NA |
| 725 | 23.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 752 | 23.29 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 9 |
| 771 | 23.30 | humidity | 90 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 788 | 23.31 | temperature | 20 | 10 | > th | dose independent | rect. | 5 | 21 |
| 792 | 23.31 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 810 | 23.32 | humidity | 60 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 889 | 23.35 | humidity | 60 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 891 | 23.35 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 23 |
| 957 | 23.38 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 13 |
| 981 | 23.38 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 987 | 23.39 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 13 |