Os01g0925700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0925700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.82 | 0.44 | 11.4 | 1.68 | 0.339 | 1 | 0.572 | 2.39 | 0.407 | 22.5 | 44.34 | 4109 | -- | -- |
| 91.64 | 0.446 | 11.3 | 1.55 | 0.375 | 0.875 | 0.598 | -- | 0.416 | 22.9 | 45.6 | 3337 | -- | -- |
| 88.18 | 0.437 | 11.4 | 1.64 | 0.344 | 1.2 | -- | 2.76 | 0.435 | 22.1 | 49.07 | 4115 | -- | -- |
| 92.95 | 0.449 | 11.3 | 1.53 | 0.378 | 0.916 | -- | -- | 0.406 | 22.8 | 47 | 3337 | -- | -- |
| 95.12 | 0.454 | 11.3 | 1.67 | -- | 1.26 | -- | 2.86 | 0.431 | -- | 47.91 | 4071 | -- | -- |
| 104.97 | 0.48 | 11.3 | 1.5 | 0.406 | -- | 0.709 | -- | 0.412 | 22.9 | -- | -- | -- | -- |
| 106.99 | 0.484 | 11.3 | 1.47 | 0.407 | -- | -- | -- | 0.41 | 22.5 | -- | -- | -- | -- |
| 101.66 | 0.47 | 11.3 | 1.55 | -- | 0.929 | -- | -- | 0.405 | -- | 46.45 | 3516 | -- | -- |
| 148.45 | 0.567 | 11.4 | -- | 0.301 | 0.866 | -- | -- | 0.168 | 22.7 | 40 | 2681 | -- | -- |
| 117.15 | 0.506 | 11.3 | 1.48 | -- | -- | -- | -- | 0.412 | -- | -- | -- | -- | -- |
| 163.85 | 0.599 | 11.4 | -- | 0.417 | -- | -- | -- | 0.247 | 22.8 | -- | -- | -- | -- |
| 153.86 | 0.578 | 11.4 | -- | -- | 1.01 | -- | -- | 0.136 | -- | 40 | 2531 | -- | -- |
| 174.6 | 0.617 | 11.4 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.64 | radiation | 40 | 1440 | < th | dose independent | rect. | 19 | 14 |
| 2 | 81.88 | radiation | 40 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 3 | 82.01 | radiation | 40 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 5 | 82.14 | radiation | 40 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 8 | 82.41 | radiation | 40 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 12 | 82.48 | radiation | 40 | 1440 | < th | dose independent | rect. | 16 | 17 |
| 15 | 82.68 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 16 | 82.68 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 20 | 82.77 | radiation | 40 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 37 | 82.86 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 39 | 83.01 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 44 | 83.31 | wind | 1 | 43200 | > th | dose independent | sin | 7 | NA |
| 53 | 83.66 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 57 | 83.70 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 22 |
| 60 | 83.72 | radiation | 20 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 61 | 83.74 | radiation | 20 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 93 | 84.08 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 102 | 84.32 | radiation | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 103 | 84.33 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 120 | 84.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 122 | 84.81 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 141 | 84.85 | wind | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 142 | 84.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 12 |
| 154 | 85.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 22 |
| 165 | 85.14 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 14 |
| 167 | 85.15 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 183 | 85.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 20 |
| 200 | 85.21 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 221 | 85.42 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 233 | 85.53 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 236 | 85.56 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 254 | 85.60 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 256 | 85.62 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 19 |
| 257 | 85.63 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 260 | 85.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 282 | 85.70 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 301 | 85.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 302 | 85.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 8 |
| 309 | 85.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 331 | 85.95 | wind | 1 | 43200 | < th | dose independent | sin | 7 | NA |
| 340 | 86.01 | wind | 1 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 341 | 86.02 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 388 | 86.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 390 | 86.17 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 410 | 86.25 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 412 | 86.26 | radiation | 40 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 436 | 86.38 | wind | 1 | 1440 | < th | dose dependent | rect. | 4 | 10 |
| 452 | 86.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 23 |
| 469 | 86.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 20 |
| 498 | 86.66 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 504 | 86.68 | wind | 1 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 522 | 86.69 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 523 | 86.69 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 526 | 86.71 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 20 |
| 529 | 86.74 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 531 | 86.76 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 546 | 86.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 13 |
| 549 | 86.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 577 | 86.88 | radiation | 40 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 593 | 86.91 | wind | 1 | 1440 | > th | dose independent | sin | 2 | NA |
| 595 | 86.94 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 601 | 86.96 | wind | 1 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 607 | 86.97 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 655 | 87.13 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 656 | 87.13 | wind | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 672 | 87.14 | radiation | 40 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 673 | 87.14 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 13 |
| 675 | 87.15 | radiation | 40 | 4320 | < th | dose dependent | rect. | 3 | 5 |
| 687 | 87.17 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 10 |
| 694 | 87.18 | radiation | 40 | 4320 | > th | dose dependent | sin | 12 | NA |
| 695 | 87.18 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 737 | 87.22 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 3 |
| 744 | 87.23 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 843 | 87.43 | wind | 1 | 1440 | < th | dose independent | sin | 2 | NA |
| 845 | 87.44 | wind | 3 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 881 | 87.54 | wind | 3 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 891 | 87.56 | wind | 1 | 1440 | < th | dose dependent | rect. | 4 | 17 |