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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0925600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.84 (0.0594) R2 : 0.185
β1 : 0.351 (0.215) R2dD : 0.00539 R2D : -0.031
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.53 (0.312) R2dE : 0.224 R2E : -0.0156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.69 (1.28) R2dD*E : 0.153 R2D*E : -0.124
γ1 : -0.508 (0.127) R2dN8 : 0.0429 R2N8 : 0.047
σ : 1.05
deviance : 510.2
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 5.234
memory length : 4169
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21
open length of G : 1.13

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
503.23 1.05 3.84 0.364 0.332 2.58 0.332 8.78 -0.497 14.2 5.222 4142 21 1.13
558.49 1.1 3.76 0.867 0.291 2.05 -0.136 -- -0.447 14 5.012 5231 20.9 1.14
503.46 1.05 3.84 0.372 0.331 2.57 -- 8.7 -0.497 13.6 5.225 4142 21 1.13
532.64 1.07 3.67 0.979 0.0816 2.11 -- -- -0.235 12.2 5.201 11135 20.5 1.83
510.2 1.05 3.84 0.351 -- 2.53 -- 8.69 -0.508 -- 5.234 4169 21 1.13
584.05 1.13 3.77 0.0848 0.295 -- -0.138 -- -0.658 12.2 -- -- -- --
584.11 1.13 3.77 0.0799 0.296 -- -- -- -0.658 12.5 -- -- -- --
534.47 1.08 3.66 0.978 -- 2.04 -- -- -0.226 -- 5.2 11144 20.5 1.82
530.51 1.07 3.67 -- 0.192 1.55 -- -- -0.288 10.9 5.477 11238 20.1 0.584
589.61 1.13 3.78 0.0698 -- -- -- -- -0.663 -- -- -- -- --
584.28 1.13 3.77 -- 0.295 -- -- -- -0.667 12.4 -- -- -- --
533.23 1.08 3.67 -- -- 1.57 -- -- -0.299 -- 5.4 11219 20.1 0.65
589.74 1.13 3.78 -- -- -- -- -- -0.671 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 508.72 wind 5 4320 > th dose dependent rect. 18 5
2 508.87 wind 5 4320 > th dose independent rect. 21 1
4 509.04 wind 7 4320 < th dose independent rect. 18 4
14 511.04 wind 7 4320 > th dose independent rect. 18 4
27 512.41 wind 5 4320 < th dose independent rect. 21 1
35 513.71 wind 9 4320 > th dose dependent rect. 20 4
137 518.72 humidity 80 1440 > th dose dependent rect. 1 5
141 518.89 humidity 50 1440 > th dose dependent rect. 24 6
145 519.08 humidity 90 1440 < th dose dependent rect. 24 1
148 519.28 atmosphere 995 14400 > th dose independent rect. 10 4
155 519.52 humidity 80 1440 > th dose dependent rect. 5 1
159 519.81 humidity 50 1440 > th dose dependent rect. 3 1
191 520.50 humidity 50 1440 > th dose dependent rect. 5 1
213 521.04 humidity 90 1440 < th dose dependent rect. 23 5
234 522.01 humidity 90 1440 < th dose independent rect. 2 1
246 522.26 humidity 90 1440 < th dose dependent rect. 23 7
291 523.77 humidity 90 1440 < th dose independent rect. 24 6
298 523.88 atmosphere 995 14400 > th dose independent rect. 10 8
299 523.91 atmosphere 995 14400 < th dose independent rect. 15 4
302 523.91 atmosphere 995 14400 > th dose independent rect. 10 10
308 524.00 atmosphere 1000 14400 < th dose dependent rect. 6 1
311 524.06 atmosphere 995 14400 > th dose independent rect. 7 11
312 524.06 atmosphere 995 14400 > th dose independent rect. 7 13
349 524.18 atmosphere 995 14400 > th dose independent rect. 7 8
364 524.28 atmosphere 995 14400 < th dose dependent rect. 15 4
371 524.32 atmosphere 995 14400 > th dose independent rect. 12 8
373 524.34 atmosphere 995 14400 > th dose independent rect. 12 6
392 524.54 atmosphere 995 14400 < th dose dependent rect. 16 1
393 524.55 atmosphere 995 14400 > th dose independent rect. 15 3
406 524.63 atmosphere 995 14400 > th dose independent rect. 15 5
482 524.81 atmosphere 1000 14400 > th dose independent rect. 23 1
483 524.82 atmosphere 1000 14400 < th dose independent rect. 23 1
489 524.87 atmosphere 995 14400 > th dose independent rect. 12 3
493 524.92 atmosphere 995 14400 > th dose independent rect. 17 1
506 525.04 wind 5 14400 > th dose independent rect. 12 22
510 525.08 humidity 90 1440 > th dose independent rect. 5 1
512 525.10 humidity 90 1440 < th dose dependent rect. 3 1
522 525.27 wind 7 4320 < th dose independent rect. 8 1
545 525.36 wind 5 14400 > th dose dependent rect. 13 21
552 525.42 wind 5 14400 > th dose independent rect. 1 21
559 525.48 wind 7 4320 > th dose independent rect. 8 1
651 525.96 wind 5 14400 < th dose independent rect. 1 21
681 526.11 wind 5 14400 < th dose independent rect. 13 23
687 526.15 temperature 20 720 < th dose independent rect. 19 1
692 526.16 wind 5 14400 < th dose independent rect. 11 23
736 526.29 wind 5 14400 > th dose independent rect. 20 23
739 526.30 wind 5 14400 > th dose independent no NA NA
741 526.31 wind 5 14400 > th dose independent rect. 18 23
758 526.36 atmosphere 1000 14400 < th dose dependent sin 8 NA
789 526.47 wind 5 14400 > th dose independent rect. 6 23
790 526.47 atmosphere 1000 14400 < th dose dependent rect. 24 1
857 526.63 wind 5 14400 > th dose independent rect. 8 23
918 526.78 atmosphere 1000 14400 < th dose independent rect. 2 1
920 526.78 wind 5 14400 < th dose independent rect. 20 23
945 526.84 atmosphere 1000 14400 > th dose independent rect. 2 1
950 526.85 wind 5 14400 < th dose independent rect. 18 23