Os01g0925400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : No apical meristem (NAM) protein domain containing protein.
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Os01g0925400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : No apical meristem (NAM) protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.28 | 0.346 | 10.4 | -1.11 | 0.687 | -0.16 | 0.595 | 1.73 | -0.0762 | 2.75 | 71 | 1190 | -- | -- |
| 59.32 | 0.359 | 10.4 | -0.847 | 0.698 | -0.12 | 0.299 | -- | -0.0147 | 3.04 | 79 | 888 | -- | -- |
| 55.17 | 0.346 | 10.4 | -1.07 | 0.747 | -0.0947 | -- | 1.67 | -0.0566 | 2.81 | 70 | 1570 | -- | -- |
| 59.12 | 0.358 | 10.4 | -0.844 | 0.715 | 0.188 | -- | -- | 0.064 | 2.86 | 75 | 3826 | -- | -- |
| 75.48 | 0.407 | 10.4 | -0.803 | -- | 0.355 | -- | 0.229 | 0.034 | -- | 74.24 | 232 | -- | -- |
| 59.75 | 0.362 | 10.4 | -0.847 | 0.71 | -- | 0.286 | -- | 0.0103 | 2.82 | -- | -- | -- | -- |
| 60.02 | 0.363 | 10.4 | -0.854 | 0.712 | -- | -- | -- | 0.00846 | 2.87 | -- | -- | -- | -- |
| 73.55 | 0.401 | 10.4 | -0.79 | -- | 0.376 | -- | -- | 0.0129 | -- | 78.26 | 151 | -- | -- |
| 78.25 | 0.412 | 10.4 | -- | 0.693 | 0.198 | -- | -- | 0.13 | 2.88 | 73 | 2905 | -- | -- |
| 89.29 | 0.442 | 10.4 | -0.824 | -- | -- | -- | -- | 0.0268 | -- | -- | -- | -- | -- |
| 79.25 | 0.416 | 10.4 | -- | 0.695 | -- | -- | -- | 0.104 | 2.86 | -- | -- | -- | -- |
| 89.99 | 0.443 | 10.4 | -- | -- | 0.393 | -- | -- | 0.0998 | -- | 78.26 | 151 | -- | -- |
| 107.19 | 0.483 | 10.4 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.76 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 2 | 51.78 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 4 | 51.92 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 7 | 51.98 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 2 | 11 |
| 8 | 51.98 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 9 | 51.98 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 21 | 52.27 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 39 | 52.48 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 58 | 52.69 | humidity | 70.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 74 | 52.74 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 7 | 6 |
| 83 | 52.80 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 85 | 52.81 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 98 | 52.91 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 14 |
| 186 | 53.24 | humidity | 70.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 219 | 53.44 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 273 | 53.72 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 306 | 53.84 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 308 | 53.84 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 310 | 53.85 | humidity | 70.0 | 720 | > th | dose independent | rect. | 5 | 19 |
| 313 | 53.88 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 340 | 53.93 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 345 | 53.95 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 395 | 54.03 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 403 | 54.05 | temperature | 25.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 408 | 54.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 410 | 54.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 411 | 54.08 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 23 | 15 |
| 443 | 54.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 444 | 54.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 452 | 54.19 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 466 | 54.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 481 | 54.26 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 500 | 54.32 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 516 | 54.32 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 536 | 54.33 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 540 | 54.33 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 549 | 54.36 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 551 | 54.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 562 | 54.39 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 567 | 54.40 | temperature | 15.0 | 10 | > th | dose independent | rect. | 11 | 23 |
| 594 | 54.42 | radiation | 40.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 648 | 54.47 | radiation | 40.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 655 | 54.47 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 658 | 54.48 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 669 | 54.50 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 671 | 54.50 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 674 | 54.51 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 677 | 54.52 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 690 | 54.53 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 691 | 54.54 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 711 | 54.58 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 717 | 54.58 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 725 | 54.59 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 24 | 8 |
| 732 | 54.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 737 | 54.61 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 742 | 54.61 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 744 | 54.62 | wind | 5.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 751 | 54.63 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 13 | 10 |
| 758 | 54.64 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 761 | 54.64 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 809 | 54.71 | wind | 5.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 817 | 54.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 839 | 54.74 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 851 | 54.75 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 11 | 12 |
| 874 | 54.77 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 899 | 54.80 | temperature | 30.0 | 10 | < th | dose independent | rect. | 10 | 1 |
| 901 | 54.80 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 918 | 54.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 925 | 54.81 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 928 | 54.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 936 | 54.81 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 3 | 15 |
| 939 | 54.82 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 972 | 54.84 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 11 | 14 |
| 982 | 54.85 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 992 | 54.86 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 18 | NA |
| 993 | 54.86 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 995 | 54.86 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 997 | 54.86 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 1000 | 54.86 | wind | 9.0 | 10 | < th | dose independent | rect. | 11 | 23 |