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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0925100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.94 (0.0607) R2 : 0.297
β1 : -1.24 (0.226) R2dD : 0.0493 R2D : 0.084
β2 : 2.01 (0.189) R2dC : 0.267 R2C : 0.00173
β3 : -2.45 (0.259) R2dE : 0.222 R2E : -0.0285
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.131 (0.134) R2dN8 : 0.00224 R2N8 : -0.00344
σ : 1.13
deviance : 585.06
__
_____
C
peak time of C : 16.1
E
wheather : temperature
threshold : 20.4
memory length : 14
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.38
open length of G : 20.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
580.3 1.13 4.98 -1.56 2.01 -2.33 0.0837 -2.25 0.0318 16 20.08 11 2.1 19.9
583.65 1.13 4.94 -1.23 2 -2.42 -0.729 -- 0.117 16 20.35 14 2.52 20
580.24 1.12 4.98 -1.55 2.01 -2.33 -- -2.16 0.0322 16 20.11 13 2.1 19.9
585.06 1.13 4.94 -1.24 2.01 -2.45 -- -- 0.131 16.1 20.4 14 2.38 20.4
695.29 1.23 4.97 -1.28 -- -1.85 -- -0.789 -0.0104 -- 13.53 1451 0.174 19.6
678.66 1.22 5.03 -1.7 1.2 -- -0.35 -- -0.223 18 -- -- -- --
678.9 1.22 5.03 -1.7 1.2 -- -- -- -0.225 18.1 -- -- -- --
689.87 1.22 4.91 -1.16 -- -1.36 -- -- 0.108 -- 22.31 1366 1.82 19.9
622.17 1.16 4.92 -- 2.13 -2.77 -- -- 0.297 15.9 20.39 14 2.78 20
753.06 1.28 5.01 -1.73 -- -- -- -- -0.251 -- -- -- -- --
755.03 1.29 4.99 -- 1.22 -- -- -- -0.0353 18.1 -- -- -- --
724.79 1.25 4.88 -- -- -1.74 -- -- 0.273 -- 20.49 1362 2.82 22.5
832.31 1.35 4.96 -- -- -- -- -- -0.0589 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 580.86 temperature 20 10 > th dose dependent rect. 2 20
3 584.06 temperature 20 10 > th dose dependent rect. 5 17
6 585.14 temperature 15 90 > th dose dependent rect. 6 15
39 590.74 temperature 25 10 > th dose independent rect. 5 16
77 593.10 temperature 25 90 > th dose independent rect. 7 14
105 595.40 temperature 20 10 > th dose dependent rect. 13 23
125 596.02 temperature 20 10 > th dose dependent rect. 15 23
169 598.71 temperature 20 10 > th dose dependent rect. 16 20
173 598.96 temperature 25 90 > th dose independent rect. 1 20
267 602.63 temperature 10 720 > th dose dependent rect. 24 18
295 603.25 temperature 20 10 > th dose dependent no NA NA
297 603.28 temperature 30 30 < th dose dependent rect. 19 23
308 603.60 temperature 20 10 > th dose dependent rect. 4 23
333 604.26 wind 5 90 < th dose independent rect. 15 20
341 604.46 temperature 30 30 < th dose dependent rect. 3 23
355 604.80 wind 3 90 > th dose independent rect. 1 15
379 605.56 temperature 30 720 < th dose dependent rect. 3 14
383 605.69 temperature 30 30 < th dose dependent rect. 7 23
390 605.95 wind 5 90 < th dose independent rect. 23 23
394 606.03 temperature 30 30 < th dose dependent rect. 9 23
449 607.07 temperature 10 720 > th dose dependent sin 4 NA
451 607.14 temperature 10 10 > th dose dependent no NA NA
455 607.29 wind 5 90 > th dose independent rect. 17 23
460 607.35 wind 7 720 < th dose independent rect. 13 14
462 607.44 temperature 30 30 < th dose dependent rect. 17 23
464 607.46 temperature 10 720 > th dose dependent rect. 22 14
466 607.50 wind 5 90 > th dose independent rect. 21 19
472 607.60 temperature 30 30 < th dose dependent rect. 11 23
478 607.65 temperature 15 720 > th dose dependent rect. 7 4
485 607.68 temperature 10 720 > th dose dependent rect. 5 7
486 607.73 temperature 30 30 < th dose dependent no NA NA
489 607.75 wind 5 90 > th dose independent rect. 19 21
529 608.32 temperature 20 10 > th dose dependent rect. 21 23
539 608.50 wind 1 90 > th dose dependent rect. 21 19
544 608.63 temperature 20 10 > th dose dependent rect. 7 23
569 608.96 temperature 30 30 < th dose dependent rect. 15 23
572 609.01 temperature 30 30 < th dose dependent rect. 13 23
592 609.21 wind 5 90 < th dose independent rect. 1 20
596 609.31 temperature 20 1440 > th dose dependent rect. 13 1
612 609.50 temperature 30 720 < th dose dependent sin 2 NA
653 610.10 temperature 25 1440 > th dose dependent rect. 13 3
683 610.37 wind 5 90 < th dose independent rect. 13 23
708 610.59 temperature 25 1440 > th dose dependent rect. 15 1
713 610.64 temperature 25 10 < th dose independent rect. 3 23
797 611.42 temperature 25 10 > th dose independent sin 22 NA
806 611.49 wind 7 720 < th dose independent rect. 15 10
868 611.92 humidity 50 270 > th dose independent rect. 10 14
896 612.17 wind 3 10 < th dose independent rect. 2 11
906 612.24 atmosphere 1005 270 > th dose independent rect. 9 5
945 612.54 radiation 10 1440 > th dose independent rect. 8 6
954 612.58 temperature 15 720 > th dose dependent rect. 2 10
986 612.84 wind 3 90 > th dose independent rect. 9 7
997 612.88 radiation 10 1440 > th dose independent rect. 9 4
1000 612.89 temperature 20 10 > th dose dependent rect. 11 23