Os01g0924700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0924700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.94 | 0.598 | 4.54 | 2.9 | 0.372 | -0.735 | 0.83 | 0.848 | 0.8 | 19.3 | 25.5 | 432 | -- | -- |
| 162.68 | 0.594 | 4.57 | 2.71 | 0.406 | -0.761 | 1.04 | -- | 0.692 | 19.7 | 25.73 | 538 | -- | -- |
| 162.21 | 0.593 | 4.51 | 2.99 | 0.39 | -0.804 | -- | 1.31 | 0.835 | 20.5 | 25.5 | 518 | -- | -- |
| 164.6 | 0.598 | 4.58 | 2.68 | 0.407 | -0.748 | -- | -- | 0.654 | 21.3 | 26.03 | 605 | -- | -- |
| 168.36 | 0.604 | 4.54 | 2.89 | -- | -0.553 | -- | 1.08 | 0.738 | -- | 25.52 | 486 | -- | -- |
| 179.15 | 0.627 | 4.62 | 2.45 | 0.19 | -- | -1.21 | -- | 0.428 | 4.97 | -- | -- | -- | -- |
| 182.31 | 0.632 | 4.62 | 2.45 | 0.202 | -- | -- | -- | 0.433 | 3.05 | -- | -- | -- | -- |
| 170.58 | 0.608 | 4.57 | 2.59 | -- | -0.494 | -- | -- | 0.636 | -- | 25.6 | 466 | -- | -- |
| 339.4 | 0.863 | 4.67 | -- | 0.17 | -0.106 | -- | -- | 0.204 | 3.03 | 25.6 | 449 | -- | -- |
| 184.64 | 0.635 | 4.62 | 2.46 | -- | -- | -- | -- | 0.439 | -- | -- | -- | -- | -- |
| 340.17 | 0.863 | 4.68 | -- | 0.25 | -- | -- | -- | 0.161 | 3.09 | -- | -- | -- | -- |
| 340.54 | 0.862 | 4.66 | -- | -- | -0.178 | -- | -- | 0.235 | -- | 25.59 | 455 | -- | -- |
| 343.74 | 0.865 | 4.68 | -- | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.83 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 12 |
| 9 | 158.23 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 13 |
| 20 | 158.87 | temperature | 25 | 270 | < th | dose independent | sin | 16 | NA |
| 22 | 159.14 | temperature | 25 | 270 | > th | dose independent | sin | 16 | NA |
| 35 | 159.75 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 52 | 160.62 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 13 |
| 66 | 160.89 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 15 |
| 187 | 162.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 213 | 163.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 246 | 163.30 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 1 |
| 263 | 163.49 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |
| 271 | 163.57 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 21 |
| 272 | 163.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 13 |
| 309 | 163.92 | temperature | 25 | 10 | < th | dose independent | rect. | 10 | 16 |
| 323 | 164.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 331 | 164.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 2 |
| 372 | 164.20 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 421 | 164.46 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 13 |
| 436 | 164.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 456 | 164.68 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 10 |
| 486 | 164.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 509 | 164.98 | radiation | 20 | 720 | < th | dose dependent | rect. | 13 | 4 |
| 576 | 165.35 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 21 |
| 644 | 165.71 | temperature | 25 | 10 | < th | dose independent | sin | 16 | NA |
| 653 | 165.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 654 | 165.77 | radiation | 20 | 720 | < th | dose independent | rect. | 12 | 4 |
| 658 | 165.79 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 22 |
| 675 | 165.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 688 | 165.92 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 701 | 165.94 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 718 | 166.00 | temperature | 10 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 745 | 166.11 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 7 |
| 762 | 166.16 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 774 | 166.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 10 |
| 784 | 166.23 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 835 | 166.36 | radiation | 20 | 720 | < th | dose independent | rect. | 12 | 19 |
| 851 | 166.44 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 871 | 166.51 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 19 |
| 879 | 166.53 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 16 |
| 894 | 166.58 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 1 |
| 924 | 166.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 16 |