Os01g0924000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloroplast 50S ribosomal protein L27 (Fragment).
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Os01g0924000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloroplast 50S ribosomal protein L27 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.89 | 0.225 | 14.5 | -0.546 | 0.354 | -0.301 | -0.562 | 0.422 | -0.279 | 21.4 | 19.92 | 537 | -- | -- |
| 23.23 | 0.225 | 14.5 | -0.594 | 0.366 | -0.395 | -0.464 | -- | -0.292 | 21.5 | 19.6 | 545 | -- | -- |
| 23.83 | 0.227 | 14.5 | -0.535 | 0.356 | -0.295 | -- | 0.326 | -0.274 | 21.5 | 20.42 | 476 | -- | -- |
| 24.01 | 0.228 | 14.5 | -0.578 | 0.364 | -0.399 | -- | -- | -0.289 | 21.6 | 19.51 | 532 | -- | -- |
| 29.86 | 0.256 | 14.4 | -0.572 | -- | -0.219 | -- | 0.445 | -0.297 | -- | 20.42 | 476 | -- | -- |
| 26.61 | 0.242 | 14.5 | -0.734 | 0.321 | -- | -0.467 | -- | -0.36 | 21.6 | -- | -- | -- | -- |
| 27.41 | 0.245 | 14.5 | -0.717 | 0.323 | -- | -- | -- | -0.36 | 21.8 | -- | -- | -- | -- |
| 30.43 | 0.257 | 14.4 | -0.538 | -- | -0.493 | -- | -- | -0.283 | -- | 19 | 1697 | -- | -- |
| 27.57 | 0.245 | 14.4 | -- | 0.325 | -0.618 | -- | -- | -0.159 | 21.8 | 17.1 | 47520 | -- | -- |
| 33.61 | 0.271 | 14.5 | -0.713 | -- | -- | -- | -- | -0.36 | -- | -- | -- | -- | -- |
| 40.95 | 0.299 | 14.5 | -- | 0.321 | -- | -- | -- | -0.28 | 21.6 | -- | -- | -- | -- |
| 33.67 | 0.27 | 14.4 | -- | -- | -0.642 | -- | -- | -0.182 | -- | 16.7 | 24439 | -- | -- |
| 47.04 | 0.32 | 14.4 | -- | -- | -- | -- | -- | -0.281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.34 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 2 | 21.38 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 5 | 21.51 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 7 | 21.61 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 8 | 21.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 13 | 21.73 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 18 | 21.78 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 18 |
| 30 | 21.90 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 31 | 21.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 50 | 22.01 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 51 | 22.02 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 57 | 22.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 58 | 22.04 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 69 | 22.14 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 77 | 22.18 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 109 | 22.32 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 114 | 22.34 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 115 | 22.35 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 120 | 22.39 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 121 | 22.40 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 124 | 22.41 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 146 | 22.49 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 19 |
| 152 | 22.51 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 153 | 22.51 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 156 | 22.53 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 161 | 22.55 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 178 | 22.58 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 181 | 22.60 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 184 | 22.60 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 186 | 22.61 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 187 | 22.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 191 | 22.61 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 195 | 22.62 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 203 | 22.63 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 213 | 22.64 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 215 | 22.65 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 219 | 22.65 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 257 | 22.71 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 267 | 22.71 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 278 | 22.73 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 280 | 22.73 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 306 | 22.76 | humidity | 80.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 315 | 22.76 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 317 | 22.76 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 326 | 22.78 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 333 | 22.78 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 15 |
| 342 | 22.79 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 343 | 22.79 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 344 | 22.79 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 351 | 22.80 | wind | 7.0 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 362 | 22.80 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 374 | 22.82 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 382 | 22.82 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 391 | 22.83 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 18 |
| 402 | 22.84 | wind | 7.0 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 433 | 22.86 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 440 | 22.86 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 460 | 22.88 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 479 | 22.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 523 | 22.90 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 15 |
| 536 | 22.91 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 551 | 22.92 | temperature | 20.0 | 720 | > th | dose independent | sin | 10 | NA |
| 555 | 22.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 556 | 22.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 580 | 22.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 638 | 22.94 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 663 | 22.95 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 8 |
| 673 | 22.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 677 | 22.96 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 701 | 22.97 | temperature | 20.0 | 720 | < th | dose independent | sin | 10 | NA |
| 720 | 22.97 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 732 | 22.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 751 | 22.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 765 | 22.98 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 766 | 22.98 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 770 | 22.98 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 773 | 22.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 779 | 22.98 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 785 | 22.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 791 | 22.99 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 794 | 22.99 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 796 | 22.99 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 813 | 22.99 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 817 | 22.99 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 10 |
| 844 | 23.00 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 846 | 23.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 851 | 23.01 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 871 | 23.01 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 886 | 23.02 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 895 | 23.02 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 953 | 23.03 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 973 | 23.04 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 979 | 23.04 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 14 |