Os01g0923900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os01g0923900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.34 | 0.246 | 11 | 0.477 | 0.576 | -1.12 | 0.0822 | 1.96 | 0.247 | 3.04 | 14.99 | 655 | -- | -- |
| 30.34 | 0.257 | 11.1 | 0.122 | 0.503 | -1.14 | 0.089 | -- | 0.157 | 2.97 | 12.33 | 557 | -- | -- |
| 27.27 | 0.243 | 11 | 0.485 | 0.516 | -1.16 | -- | 2.04 | 0.252 | 3 | 14.9 | 570 | -- | -- |
| 30.31 | 0.256 | 11.1 | 0.111 | 0.439 | -1.15 | -- | -- | 0.155 | 3.25 | 12.89 | 454 | -- | -- |
| 33.2 | 0.268 | 11 | 0.488 | -- | -1.58 | -- | 1.82 | 0.295 | -- | 14.04 | 264 | -- | -- |
| 45.1 | 0.315 | 11.1 | -0.145 | 0.697 | -- | 0.017 | -- | -0.015 | 4.49 | -- | -- | -- | -- |
| 45.1 | 0.314 | 11.1 | -0.145 | 0.697 | -- | -- | -- | -0.0151 | 4.5 | -- | -- | -- | -- |
| 35.33 | 0.277 | 11 | 0.196 | -- | -1.55 | -- | -- | 0.211 | -- | 10.71 | 242 | -- | -- |
| 30.6 | 0.258 | 11.1 | -- | 0.442 | -1.1 | -- | -- | 0.137 | 3.37 | 14.5 | 440 | -- | -- |
| 71.08 | 0.394 | 11.1 | -0.118 | -- | -- | -- | -- | 0.00332 | -- | -- | -- | -- | -- |
| 45.66 | 0.316 | 11.1 | -- | 0.694 | -- | -- | -- | 0.00113 | 4.5 | -- | -- | -- | -- |
| 36.27 | 0.281 | 11 | -- | -- | -1.49 | -- | -- | 0.182 | -- | 9.983 | 236 | -- | -- |
| 71.44 | 0.395 | 11.1 | -- | -- | -- | -- | -- | 0.0164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.25 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 7 | 24.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 16 | 24.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 19 | 25.01 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 33 | 25.29 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 40 | 25.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 12 |
| 41 | 25.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 52 | 25.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 56 | 25.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 160 | 26.27 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 259 | 26.74 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 281 | 26.82 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 291 | 26.85 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 296 | 26.85 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 299 | 26.85 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 381 | 27.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 390 | 27.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 504 | 27.50 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 511 | 27.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 519 | 27.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 560 | 27.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 572 | 27.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 579 | 27.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 586 | 27.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 612 | 27.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 655 | 27.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 693 | 27.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 739 | 28.07 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 743 | 28.08 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 802 | 28.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 889 | 28.33 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 905 | 28.36 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |