Os01g0923600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CG-1 domain containing protein.
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Os01g0923600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CG-1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.74 | 0.265 | 9.3 | -0.551 | 0.492 | 0.664 | 0.187 | -1.58 | 0.13 | 3.74 | 9.338 | 1068 | -- | -- |
| 33.61 | 0.27 | 9.26 | -0.237 | 0.496 | 0.634 | -0.0482 | -- | 0.211 | 3.32 | 14.25 | 1229 | -- | -- |
| 31.82 | 0.263 | 9.3 | -0.537 | 0.489 | 0.656 | -- | -1.48 | 0.133 | 3.61 | 9.453 | 1103 | -- | -- |
| 33.61 | 0.27 | 9.26 | -0.232 | 0.488 | 0.629 | -- | -- | 0.213 | 3.39 | 13.93 | 1214 | -- | -- |
| 44.61 | 0.311 | 9.3 | -0.557 | -- | 0.826 | -- | -1.41 | 0.118 | -- | 14.55 | 1134 | -- | -- |
| 39.99 | 0.296 | 9.24 | -0.0437 | 0.551 | -- | -0.0621 | -- | 0.324 | 3.11 | -- | -- | -- | -- |
| 40.01 | 0.296 | 9.24 | -0.0424 | 0.551 | -- | -- | -- | 0.324 | 3.13 | -- | -- | -- | -- |
| 46.29 | 0.317 | 9.27 | -0.262 | -- | 0.81 | -- | -- | 0.196 | -- | 8.359 | 1147 | -- | -- |
| 34.84 | 0.275 | 9.25 | -- | 0.493 | 0.532 | -- | -- | 0.253 | 3.36 | 12.93 | 1202 | -- | -- |
| 57.33 | 0.354 | 9.23 | -0.019 | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
| 40.05 | 0.296 | 9.23 | -- | 0.55 | -- | -- | -- | 0.329 | 3.13 | -- | -- | -- | -- |
| 47.88 | 0.322 | 9.26 | -- | -- | 0.702 | -- | -- | 0.241 | -- | 1.972 | 1144 | -- | -- |
| 57.34 | 0.353 | 9.23 | -- | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 2 | 31.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 14 | 31.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 18 |
| 16 | 31.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 7 |
| 67 | 31.89 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 75 | 31.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 270 | 32.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 319 | 32.10 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 339 | 32.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 481 | 32.22 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 610 | 32.30 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 611 | 32.30 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 707 | 32.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 708 | 32.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 732 | 32.36 | temperature | 15 | 270 | > th | dose independent | rect. | 14 | 16 |
| 747 | 32.37 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 777 | 32.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 788 | 32.40 | temperature | 10 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 802 | 32.41 | temperature | 15 | 270 | > th | dose independent | rect. | 13 | 18 |
| 810 | 32.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 853 | 32.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 886 | 32.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 932 | 32.49 | wind | 7 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 966 | 32.51 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |