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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0923400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0416) R2 : 0.0188
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.259 (0.0875) R2dN8 : 0.0243 R2N8 : 0.0188
σ : 0.783
deviance : 281.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
260.66 0.759 3.34 0.316 0.12 12.2 0.0762 21.1 0.307 9.92 1015 1499 -- --
267.84 0.762 3.26 0.172 0.0898 2.11 0.163 -- 0.306 13.3 1018 1431 -- --
260.41 0.752 3.34 0.327 0.113 12.4 -- 21.7 0.302 10.3 1016 1483 -- --
267.32 0.761 3.27 0.181 0.127 2.05 -- -- 0.296 9.86 1017 1489 -- --
261.16 0.753 3.35 0.33 -- 13 -- 22.9 0.294 -- 1016 1487 -- --
279.33 0.784 3.27 0.0677 0.166 -- -0.0847 -- 0.266 10.6 -- -- -- --
279.36 0.783 3.27 0.0639 0.167 -- -- -- 0.266 10.4 -- -- -- --
265.44 0.759 3.27 0.16 -- 2.08 -- -- 0.313 -- 1013 1072 -- --
265.28 0.759 3.26 -- 0.0904 2.06 -- -- 0.298 8.8 1014 1335 -- --
281.06 0.783 3.28 0.0611 -- -- -- -- 0.265 -- -- -- -- --
279.46 0.782 3.27 -- 0.166 -- -- -- 0.259 10.4 -- -- -- --
265.97 0.76 3.27 -- -- 2.06 -- -- 0.291 -- 1013 1220 -- --
281.16 0.783 3.28 -- -- -- -- -- 0.259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 257.50 wind 9 10 < th dose independent rect. 3 23
2 258.93 temperature 10 30 > th dose dependent rect. 3 23
5 259.92 temperature 15 30 > th dose dependent rect. 3 20
8 260.61 atmosphere 1015 1440 > th dose dependent rect. 10 12
17 260.71 atmosphere 1015 1440 > th dose dependent sin 22 NA
28 260.85 wind 9 270 > th dose independent rect. 9 2
87 261.09 atmosphere 1000 270 < th dose dependent rect. 4 2
97 261.13 wind 7 90 < th dose independent rect. 3 11
104 261.20 wind 7 270 > th dose dependent rect. 10 1
113 261.26 atmosphere 1015 1440 > th dose dependent rect. 23 22
114 261.30 temperature 20 270 < th dose dependent rect. 6 10
117 261.32 temperature 20 270 < th dose dependent rect. 6 6
126 261.39 atmosphere 1000 90 < th dose dependent rect. 5 4
130 261.48 temperature 30 10 < th dose dependent rect. 8 10
133 261.51 wind 7 270 > th dose dependent rect. 8 4
161 261.60 temperature 15 30 > th dose dependent rect. 3 17
164 261.66 atmosphere 1015 1440 > th dose dependent rect. 11 2
183 261.78 wind 7 90 > th dose dependent rect. 2 12
221 261.95 wind 7 90 < th dose independent rect. 3 13
295 262.25 atmosphere 1000 270 < th dose independent rect. 3 3
334 262.35 atmosphere 1015 1440 > th dose dependent no NA NA
358 262.36 wind 9 90 > th dose independent rect. 11 3
361 262.39 atmosphere 1015 1440 > th dose dependent rect. 17 23
368 262.41 atmosphere 1015 1440 > th dose dependent rect. 14 23
380 262.46 atmosphere 1015 1440 > th dose independent rect. 10 11
409 262.51 wind 7 10 > th dose dependent rect. 11 3
424 262.56 wind 7 10 > th dose dependent rect. 4 10
435 262.59 wind 7 10 > th dose dependent rect. 9 5
466 262.67 atmosphere 1015 1440 > th dose independent sin 22 NA
469 262.67 temperature 30 10 < th dose dependent rect. 9 18
511 262.77 atmosphere 1015 1440 < th dose independent rect. 4 16
512 262.77 temperature 30 270 < th dose dependent rect. 7 8
553 262.88 atmosphere 1015 1440 < th dose independent rect. 10 10
579 262.95 atmosphere 1015 1440 < th dose independent sin 23 NA
600 262.99 wind 9 90 > th dose independent rect. 18 20
643 263.09 temperature 20 10 < th dose dependent rect. 7 9
686 263.17 wind 9 90 < th dose dependent rect. 3 13
748 263.35 atmosphere 1010 720 > th dose dependent rect. 22 12
754 263.37 wind 7 90 > th dose independent sin 4 NA
756 263.38 atmosphere 1015 1440 > th dose independent rect. 23 21
757 263.38 wind 9 30 < th dose dependent rect. 3 23
761 263.39 temperature 30 10 < th dose dependent rect. 8 7
779 263.42 wind 7 90 < th dose independent rect. 3 16
787 263.43 wind 9 90 > th dose dependent rect. 18 20
804 263.46 temperature 20 10 < th dose dependent rect. 7 5
810 263.48 temperature 20 10 < th dose dependent rect. 7 7
848 263.55 atmosphere 1015 1440 < th dose independent rect. 23 21
849 263.55 wind 7 90 > th dose dependent sin 5 NA
866 263.58 wind 9 10 > th dose independent rect. 11 3
905 263.65 wind 7 90 < th dose independent sin 4 NA
918 263.67 temperature 15 720 > th dose independent rect. 3 10
927 263.70 radiation 1 14400 < th dose dependent rect. 3 1
935 263.71 temperature 20 30 < th dose dependent rect. 7 13
971 263.77 wind 9 270 > th dose dependent sin 7 NA
984 263.78 wind 7 10 > th dose dependent sin 4 NA
993 263.81 temperature 25 10 > th dose independent rect. 22 11