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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0922100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0622) R2 : 0.329
β1 : -1.02 (0.228) R2dD : 0.0313 R2D : -0.0151
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.57 (0.194) R2dE : 0.26 R2E : 0.221
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.918 (0.133) R2dN8 : 0.0946 R2N8 : 0.0448
σ : 1.16
deviance : 624.77
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.87
memory length : 4
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 2.99
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
596.16 1.15 4.55 -1.17 0.541 2.34 3.1 -3.5 -0.944 5.59 0.68 7 3.24 --
609.99 1.15 4.54 -1.01 0.531 2.35 2.61 -- -0.928 4.91 0.6627 6 3.31 --
613.75 1.15 4.55 -1.13 0.722 2.3 -- -2.16 -0.962 6.62 0.7135 6 3.86 --
615.12 1.16 4.53 -1.09 0.614 2.24 -- -- -0.913 6.28 0.69 6 3.5 --
623.68 1.16 4.56 -1.08 -- 2.59 -- -1.3 -0.932 -- 0.8001 4 2.96 --
709 1.25 4.5 -0.947 1.71 -- 1.12 -- -0.868 7.08 -- -- -- --
712.03 1.25 4.5 -0.922 1.71 -- -- -- -0.869 7.23 -- -- -- --
624.77 1.16 4.55 -1.02 -- 2.57 -- -- -0.918 -- 0.87 4 2.99 --
642.49 1.19 4.51 -- 0.642 2.07 -- -- -0.798 6.51 0.7197 6 3.32 --
866.18 1.38 4.54 -0.892 -- -- -- -- -0.84 -- -- -- -- --
734.45 1.27 4.47 -- 1.7 -- -- -- -0.767 7.27 -- -- -- --
652.66 1.19 4.53 -- -- 2.5 -- -- -0.803 -- 0.8659 4 2.85 --
887.15 1.39 4.51 -- -- -- -- -- -0.741 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 591.93 temperature 20.0 270 > th dose dependent rect. 3 3
2 593.85 temperature 20.0 270 > th dose dependent rect. 2 5
9 601.02 temperature 20.0 270 > th dose independent rect. 3 3
14 604.64 radiation 1.0 10 < th dose dependent sin 9 NA
17 605.05 radiation 1.0 10 > th dose independent sin 9 NA
23 607.61 temperature 20.0 10 > th dose independent rect. 5 4
26 608.73 temperature 20.0 10 > th dose dependent rect. 5 2
30 609.45 temperature 15.0 10 > th dose dependent rect. 4 5
32 609.66 radiation 1.0 10 < th dose independent sin 9 NA
39 610.79 wind 3.0 90 < th dose dependent rect. 4 5
42 611.18 wind 1.0 270 < th dose independent rect. 4 1
73 614.37 humidity 80.0 270 > th dose independent rect. 2 5
75 614.44 temperature 15.0 270 > th dose independent rect. 6 21
84 614.95 humidity 80.0 270 > th dose independent rect. 3 3
85 615.07 temperature 15.0 270 > th dose independent rect. 7 19
91 615.55 temperature 15.0 90 > th dose independent rect. 9 19
99 616.10 wind 3.0 10 < th dose independent rect. 5 4
104 616.52 humidity 70.0 270 > th dose dependent rect. 2 7
106 616.68 wind 1.0 270 < th dose dependent rect. 4 1
118 617.41 humidity 70.0 270 > th dose dependent rect. 2 5
135 618.41 wind 1.0 90 < th dose independent rect. 4 3
137 618.42 humidity 70.0 270 > th dose dependent rect. 3 3
156 619.74 radiation 1.0 10 > th dose independent rect. 5 4
173 620.01 radiation 1.0 10 < th dose dependent rect. 20 20
192 620.86 radiation 1.0 10 < th dose dependent rect. 21 17
201 621.27 wind 9.0 10 < th dose independent rect. 9 20
209 621.68 temperature 15.0 10 > th dose independent rect. 22 7
212 621.86 temperature 15.0 90 > th dose independent rect. 21 7
214 621.91 temperature 15.0 10 > th dose independent rect. 9 19
217 622.05 wind 3.0 270 < th dose independent rect. 2 5
229 622.38 temperature 20.0 270 > th dose independent rect. 3 16
266 624.23 radiation 1.0 10 < th dose independent rect. 21 17
270 624.33 humidity 50.0 90 > th dose dependent rect. 4 7
273 624.34 radiation 40.0 90 < th dose independent rect. 9 19
293 624.98 precipitation 0.1 270 < th dose independent rect. 3 3
294 624.98 precipitation 0.1 270 < th dose dependent rect. 3 3
303 625.25 radiation 1.0 10 < th dose dependent rect. 21 11
314 625.42 wind 9.0 90 < th dose independent rect. 9 19
320 625.50 temperature 20.0 270 > th dose independent rect. 2 19
322 625.54 temperature 15.0 270 > th dose independent rect. 19 8
323 625.56 radiation 1.0 10 < th dose dependent rect. 21 9
338 626.01 radiation 40.0 10 < th dose independent rect. 9 20
352 626.20 temperature 15.0 270 > th dose independent rect. 21 5
364 626.50 radiation 40.0 10 < th dose independent rect. 5 4
371 626.65 wind 9.0 270 < th dose independent rect. 6 21
389 626.97 precipitation 0.1 10 < th dose independent rect. 5 4
390 626.97 precipitation 0.1 10 < th dose dependent rect. 5 4
395 627.07 wind 1.0 90 > th dose independent rect. 21 8
400 627.28 precipitation 0.1 270 < th dose independent rect. 2 5
401 627.28 precipitation 0.1 270 < th dose dependent rect. 2 5
414 627.59 wind 5.0 270 < th dose independent rect. 3 3
422 627.76 atmosphere 995.0 10 > th dose independent rect. 9 20
427 627.84 radiation 10.0 270 < th dose independent rect. 3 3
430 627.84 temperature 10.0 10 > th dose independent rect. 5 4
432 627.84 temperature 30.0 10 < th dose independent rect. 5 4
433 627.84 humidity 50.0 10 > th dose independent rect. 5 4
435 627.84 atmosphere 995.0 10 > th dose independent rect. 5 4
436 627.84 atmosphere 1015.0 10 < th dose independent rect. 5 4
448 628.11 temperature 30.0 720 > th dose dependent rect. 18 1
464 628.14 atmosphere 1010.0 270 < th dose independent rect. 3 3
494 628.41 humidity 50.0 10 > th dose dependent rect. 5 4
496 628.51 wind 9.0 270 < th dose independent rect. 7 19
503 628.57 radiation 1.0 10 < th dose independent rect. 21 11
530 628.92 radiation 40.0 10 < th dose dependent rect. 9 20
561 629.32 temperature 10.0 270 > th dose independent rect. 3 3
563 629.32 temperature 30.0 270 < th dose independent rect. 3 3
564 629.32 humidity 50.0 270 > th dose independent rect. 3 3
567 629.32 atmosphere 995.0 270 > th dose independent rect. 3 3
608 629.88 radiation 20.0 270 < th dose independent rect. 2 5
619 630.04 humidity 50.0 10 > th dose dependent rect. 5 7
643 630.29 atmosphere 1005.0 10 > th dose independent rect. 5 2
649 630.36 temperature 20.0 43200 > th dose independent rect. 20 1
651 630.42 atmosphere 1010.0 270 < th dose independent rect. 2 5
653 630.43 temperature 20.0 43200 > th dose independent rect. 17 4
660 630.49 radiation 40.0 270 < th dose dependent rect. 3 3
665 630.56 temperature 10.0 270 > th dose independent rect. 2 5
667 630.56 temperature 30.0 270 < th dose independent rect. 2 5
668 630.56 humidity 50.0 270 > th dose independent rect. 2 5
670 630.56 atmosphere 995.0 270 > th dose independent rect. 2 5
685 630.74 temperature 20.0 43200 > th dose independent rect. 15 7
694 630.85 temperature 20.0 43200 > th dose independent rect. 11 11
742 631.36 temperature 20.0 43200 < th dose independent rect. 20 1
753 631.45 temperature 20.0 43200 < th dose independent rect. 18 4
788 631.72 precipitation 0.1 10 < th dose independent rect. 5 15
790 631.72 precipitation 0.1 10 < th dose dependent rect. 5 15
796 631.76 wind 5.0 43200 > th dose independent rect. 11 1
834 631.98 temperature 30.0 10 < th dose independent rect. 20 9
835 631.98 humidity 50.0 10 > th dose independent rect. 20 9
838 631.98 atmosphere 995.0 10 > th dose independent rect. 20 9
844 631.98 temperature 10.0 10 > th dose independent rect. 5 15
846 631.98 atmosphere 1015.0 10 < th dose independent rect. 5 15
866 632.03 wind 9.0 270 < th dose dependent rect. 16 15
874 632.09 temperature 20.0 43200 > th dose independent sin 19 NA
877 632.10 temperature 30.0 90 < th dose independent rect. 21 7
878 632.10 humidity 50.0 90 > th dose independent rect. 21 7
881 632.10 atmosphere 995.0 90 > th dose independent rect. 21 7
882 632.10 radiation 1.0 90 < th dose independent rect. 21 7
887 632.10 temperature 20.0 43200 < th dose independent rect. 12 10
888 632.10 temperature 10.0 90 > th dose independent rect. 4 17
889 632.10 atmosphere 1015.0 90 < th dose independent rect. 4 17
891 632.10 radiation 1.0 90 < th dose dependent rect. 21 7
905 632.15 precipitation 0.1 10 < th dose independent rect. 9 20
906 632.15 precipitation 0.1 10 < th dose dependent rect. 9 20
920 632.27 wind 9.0 10 < th dose independent rect. 21 8
945 632.40 wind 9.0 90 < th dose independent rect. 21 7