Os01g0921300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exostosin-like family protein.
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Os01g0921300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exostosin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.86 | 0.285 | 9.54 | -0.308 | 1.52 | -0.289 | -0.247 | 1.05 | 0.0688 | 6 | 21.21 | 2494 | -- | -- |
| 38.15 | 0.288 | 9.56 | -0.449 | 1.54 | -0.431 | -0.221 | -- | 0.102 | 6.04 | 22.8 | 11172 | -- | -- |
| 37.01 | 0.283 | 9.54 | -0.312 | 1.52 | -0.287 | -- | 1.05 | 0.0687 | 6 | 21.2 | 2490 | -- | -- |
| 38.2 | 0.288 | 9.56 | -0.467 | 1.52 | -0.444 | -- | -- | 0.0949 | 6.02 | 22.62 | 11091 | -- | -- |
| 155.91 | 0.582 | 9.54 | -0.0736 | -- | -0.312 | -- | 1.31 | 0.182 | -- | 23 | 3386 | -- | -- |
| 43 | 0.307 | 9.61 | -0.763 | 1.51 | -- | -0.196 | -- | -0.105 | 6.07 | -- | -- | -- | -- |
| 43.1 | 0.307 | 9.6 | -0.765 | 1.51 | -- | -- | -- | -0.104 | 6.07 | -- | -- | -- | -- |
| 156.26 | 0.582 | 9.58 | -0.149 | -- | -0.591 | -- | -- | 0.13 | -- | 19.8 | 20852 | -- | -- |
| 38.48 | 0.289 | 9.52 | -- | 1.58 | -0.696 | -- | -- | 0.225 | 6.06 | 20.4 | 21115 | -- | -- |
| 161.82 | 0.594 | 9.63 | -0.721 | -- | -- | -- | -- | -0.0703 | -- | -- | -- | -- | -- |
| 58.52 | 0.358 | 9.59 | -- | 1.5 | -- | -- | -- | -0.0192 | 6.1 | -- | -- | -- | -- |
| 156.58 | 0.583 | 9.57 | -- | -- | -0.7 | -- | -- | 0.182 | -- | 20.2 | 20844 | -- | -- |
| 175.55 | 0.618 | 9.61 | -- | -- | -- | -- | -- | 0.00977 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 3 | 33.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 4 | 33.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 15 | 34.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 25 | 34.29 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 29 | 34.36 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 32 | 34.40 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 34 | 34.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 42 | 34.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 64 | 34.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 73 | 34.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 87 | 34.69 | humidity | 90 | 14400 | > th | dose independent | sin | 17 | NA |
| 89 | 34.70 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 92 | 34.71 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 17 |
| 111 | 34.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 124 | 34.76 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 128 | 34.76 | humidity | 90 | 14400 | > th | dose dependent | sin | 17 | NA |
| 131 | 34.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 20 |
| 182 | 34.85 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 18 |
| 250 | 34.94 | humidity | 90 | 14400 | < th | dose independent | sin | 18 | NA |
| 299 | 34.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 352 | 35.04 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 417 | 35.10 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 475 | 35.15 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 519 | 35.20 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 532 | 35.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 552 | 35.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 566 | 35.24 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 573 | 35.25 | humidity | 90 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 617 | 35.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 658 | 35.31 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 707 | 35.35 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 709 | 35.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 741 | 35.37 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 757 | 35.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 813 | 35.43 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 818 | 35.43 | humidity | 90 | 14400 | > th | dose dependent | sin | 23 | NA |
| 840 | 35.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 841 | 35.45 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 874 | 35.47 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 889 | 35.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 952 | 35.53 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 992 | 35.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 13 |