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Os01g0921100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.37 (0.0551) R2 : 0.632
β1 : -4.99 (0.307) R2dD : 0.753 R2D : 0.0373
β2 : 0.608 (0.117) R2dC : 0.0247 R2C : 0.0429
β3 : 2.96 (0.166) R2dE : 0.424 R2E : 0.129
β4 : 2.66 (0.461) R2dD*C : 0.0295 R2D*C : 0.000808
β5 : -5.87 (1) R2dD*E : 0.101 R2D*E : -0.396
γ1 : -0.744 (0.118) R2dN8 : 0.0634 R2N8 : -0.0857
σ : 0.858
deviance : 333.73
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C
peak time of C : 2.12
E
wheather : temperature
threshold : 23.03
memory length : 1237
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13
open length of G : 6.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
333.73 0.858 8.37 -4.99 0.608 2.96 2.66 -5.87 -0.744 2.12 23.03 1237 13 6.05
357.95 0.881 8.2 -3.51 0.553 2.51 1.66 -- -0.403 2.14 22.82 1193 14 5.92
355.15 0.878 8.36 -4.77 0.714 2.88 -- -4.54 -0.691 2.56 23.09 1267 13.3 5.73
365.98 0.891 8.19 -3.54 0.691 2.52 -- -- -0.385 3.87 22.79 1208 13.2 6.11
372.15 0.898 8.33 -4.72 -- 3.14 -- -4.6 -0.686 -- 22.79 1164 13.7 6.02
574.63 1.12 8.13 -2.75 1.35 -- 2.37 -- -0.0833 2.6 -- -- -- --
593.12 1.14 8.13 -2.82 1.38 -- -- -- -0.099 3.03 -- -- -- --
377.25 0.905 8.21 -3.53 -- 2.84 -- -- -0.447 -- 21.06 1121 14.3 5.95
661.42 1.2 8.04 -- 0.673 1.9 -- -- 0.205 2.97 25.53 1048 16.3 3.18
701.7 1.24 8.13 -2.76 -- -- -- -- -0.0632 -- -- -- -- --
802.12 1.32 8.06 -- 1.32 -- -- -- 0.215 3.02 -- -- -- --
675.68 1.21 8.07 -- -- 2.17 -- -- 0.125 -- 23.94 991 16.5 3.3
902.25 1.4 8.06 -- -- -- -- -- 0.243 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 366.59 temperature 25 1440 > th dose dependent rect. 13 4
16 368.73 humidity 90 720 < th dose dependent rect. 17 6
51 372.35 humidity 90 1440 < th dose dependent rect. 15 6
56 372.61 humidity 50 1440 > th dose dependent rect. 15 6
120 375.18 temperature 25 1440 > th dose dependent rect. 13 19
129 375.46 humidity 50 1440 > th dose dependent rect. 11 12
200 377.81 temperature 25 1440 > th dose dependent sin 18 NA
254 379.63 humidity 50 1440 > th dose dependent sin 18 NA
276 380.67 radiation 1 1440 < th dose independent rect. 8 22
331 382.18 radiation 1 1440 > th dose independent rect. 8 22
333 382.23 humidity 90 1440 < th dose dependent sin 18 NA
366 383.06 radiation 1 1440 < th dose independent rect. 12 18
377 383.19 humidity 80 1440 < th dose independent rect. 7 14
410 383.97 humidity 80 1440 > th dose independent rect. 7 14
433 384.64 radiation 1 1440 > th dose independent rect. 12 18
470 385.41 temperature 25 1440 > th dose dependent rect. 6 16
554 386.43 radiation 10 1440 < th dose dependent rect. 15 13
562 386.52 radiation 1 1440 < th dose dependent rect. 8 22
596 386.90 radiation 10 1440 < th dose dependent rect. 15 4
666 387.71 temperature 25 1440 > th dose dependent no NA NA
668 387.73 temperature 25 1440 > th dose dependent rect. 21 23
732 388.72 wind 7 43200 > th dose dependent sin 15 NA
753 388.91 wind 7 43200 > th dose dependent rect. 14 15
810 389.71 wind 7 43200 > th dose independent sin 16 NA
811 389.72 humidity 80 1440 > th dose independent rect. 11 10
816 389.78 wind 7 43200 > th dose independent rect. 12 17
844 390.13 wind 7 43200 > th dose independent rect. 10 19
870 390.37 radiation 1 1440 < th dose independent sin 15 NA
871 390.37 wind 7 43200 < th dose independent rect. 10 19
908 390.64 wind 7 43200 < th dose independent sin 16 NA
950 391.06 humidity 80 1440 > th dose independent sin 22 NA