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Os01g0918200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin-like protein SMT3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.018) R2 : 0.00886
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0764 (0.0378) R2dN8 : 0.0114 R2N8 : 0.00886
σ : 0.338
deviance : 52.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.97 0.235 12.8 -0.456 0.333 0.501 0.195 -3.98 -0.126 21.1 26.87 4320 -- --
32.42 0.265 12.7 0.548 0.331 0.229 0.164 -- 0.0571 20.9 26.8 8168 -- --
25.08 0.233 12.8 -0.462 0.334 0.503 -- -3.98 -0.126 21 26.89 4328 -- --
31.51 0.261 12.7 0.302 0.34 0.354 -- -- 0.000604 21 21.6 7196 -- --
30.62 0.258 12.8 -0.578 -- 0.585 -- -4.29 -0.17 -- 26.89 3386 -- --
34.5 0.275 12.7 0.652 0.347 -- 0.197 -- 0.15 21.2 -- -- -- --
34.62 0.276 12.7 0.645 0.348 -- -- -- 0.15 21 -- -- -- --
37.68 0.286 12.7 0.343 -- 0.406 -- -- 0.0031 -- 21.37 7956 -- --
29.72 0.254 12.7 -- 0.326 0.619 -- -- -0.0775 20.6 19.39 23359 -- --
41.58 0.301 12.7 0.646 -- -- -- -- 0.148 -- -- -- -- --
45.6 0.316 12.7 -- 0.347 -- -- -- 0.0783 21.2 -- -- -- --
36.06 0.28 12.7 -- -- 0.672 -- -- -0.0564 -- 19 22412 -- --
52.58 0.338 12.7 -- -- -- -- -- 0.0764 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.92 wind 5 43200 > th dose independent rect. 14 1
2 23.93 radiation 20 43200 > th dose independent rect. 7 1
3 23.93 radiation 30 43200 > th dose independent rect. 7 3
19 23.94 radiation 30 43200 > th dose independent rect. 9 1
20 23.95 wind 5 43200 < th dose independent rect. 14 1
21 23.96 radiation 30 43200 < th dose independent rect. 9 1
23 23.97 radiation 40 43200 > th dose independent rect. 13 22
24 23.98 radiation 40 43200 < th dose independent rect. 13 1
40 24.02 radiation 20 43200 > th dose independent sin 10 NA
76 24.04 radiation 40 43200 > th dose independent rect. 8 6
111 24.04 radiation 1 43200 > th dose dependent rect. 9 1
112 24.04 radiation 20 43200 > th dose dependent rect. 9 1
113 24.05 radiation 40 43200 > th dose independent sin 22 NA
118 24.05 radiation 40 43200 > th dose independent no NA NA
302 24.06 wind 3 43200 > th dose dependent rect. 14 1
304 24.06 radiation 40 43200 > th dose dependent rect. 12 2
327 24.07 radiation 40 43200 < th dose dependent rect. 8 2
335 24.08 radiation 10 43200 > th dose dependent rect. 6 9
358 24.09 radiation 20 43200 < th dose independent rect. 6 8
383 24.10 radiation 40 43200 > th dose independent rect. 11 3
476 24.12 radiation 10 43200 > th dose dependent sin 3 NA
510 24.12 radiation 10 43200 > th dose dependent rect. 13 22
533 24.14 radiation 40 43200 > th dose independent sin 12 NA
555 24.14 radiation 30 43200 < th dose dependent rect. 2 9
573 24.15 radiation 10 43200 > th dose dependent no NA NA
580 24.15 radiation 40 43200 < th dose dependent rect. 6 9
713 24.16 radiation 30 43200 < th dose dependent sin 7 NA
715 24.16 radiation 40 43200 < th dose dependent sin 5 NA
772 24.17 radiation 20 43200 < th dose independent rect. 13 2
980 24.20 radiation 20 43200 < th dose independent sin 3 NA
981 24.20 radiation 20 43200 < th dose independent rect. 11 4