Os01g0918100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0918100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.07 | 0.426 | 11.4 | -1.26 | 1.48 | 1.7 | 0.978 | -4.95 | -0.0671 | 23.8 | 21.32 | 1358 | -- | -- |
| 96.44 | 0.457 | 11.2 | -0.201 | 1.52 | 1.71 | 0.895 | -- | 0.129 | 0.0502 | 15.14 | 7760 | -- | -- |
| 85.87 | 0.432 | 11.4 | -1.28 | 1.5 | 1.69 | -- | -4.86 | -0.0737 | 23.7 | 21.61 | 1388 | -- | -- |
| 97.31 | 0.459 | 11.3 | -0.359 | 1.51 | 2.07 | -- | -- | 0.0952 | 23.9 | 12.27 | 7807 | -- | -- |
| 177.43 | 0.62 | 11.3 | -1.27 | -- | 2.47 | -- | -5.44 | -0.0945 | -- | 21.78 | 962 | -- | -- |
| 163.06 | 0.599 | 11.1 | 0.726 | 1.61 | -- | 0.865 | -- | 0.671 | 24 | -- | -- | -- | -- |
| 166.27 | 0.604 | 11.1 | 0.693 | 1.6 | -- | -- | -- | 0.668 | 23.9 | -- | -- | -- | -- |
| 190.27 | 0.642 | 11.2 | -0.0723 | -- | 2.89 | -- | -- | 0.211 | -- | 14.9 | 939 | -- | -- |
| 99.44 | 0.464 | 11.2 | -- | 1.54 | 1.83 | -- | -- | 0.215 | 23.8 | 7.908 | 7105 | -- | -- |
| 327.99 | 0.846 | 11.1 | 0.742 | -- | -- | -- | -- | 0.689 | -- | -- | -- | -- | -- |
| 178.92 | 0.626 | 11.1 | -- | 1.61 | -- | -- | -- | 0.591 | 24 | -- | -- | -- | -- |
| 190.38 | 0.643 | 11.2 | -- | -- | 2.82 | -- | -- | 0.226 | -- | 15.26 | 938 | -- | -- |
| 342.49 | 0.864 | 11.1 | -- | -- | -- | -- | -- | 0.607 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 8 | 82.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 23 | 83.15 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 30 | 83.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 53 | 83.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 61 | 83.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 74 | 83.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 86 | 84.08 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 87 | 84.09 | wind | 5 | 43200 | > th | dose dependent | sin | 20 | NA |
| 111 | 84.22 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 123 | 84.28 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 130 | 84.35 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 143 | 84.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 148 | 84.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 154 | 84.49 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 179 | 84.65 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 182 | 84.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 183 | 84.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 188 | 84.69 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 191 | 84.71 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 194 | 84.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 205 | 84.76 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 251 | 84.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 266 | 85.01 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 280 | 85.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 283 | 85.03 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 351 | 85.34 | wind | 5 | 43200 | > th | dose independent | sin | 20 | NA |
| 361 | 85.41 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 369 | 85.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 389 | 85.56 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 398 | 85.60 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 471 | 85.88 | wind | 5 | 43200 | < th | dose independent | sin | 21 | NA |
| 475 | 85.90 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 509 | 86.02 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 513 | 86.03 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 683 | 86.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 697 | 86.66 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 730 | 86.73 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 743 | 86.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 781 | 86.85 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 825 | 86.99 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 826 | 86.99 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 924 | 87.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 7 |
| 929 | 87.26 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 932 | 87.27 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 938 | 87.28 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 945 | 87.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 965 | 87.35 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 975 | 87.38 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 19 |