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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0917700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PAK-box/P21-Rho-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.02 (0.0631) R2 : 0.292
β1 : -0.264 (0.234) R2dD : 0.00386 R2D : -0.129
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.13 (0.493) R2dE : 0.582 R2E : -0.143
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.61 (1.14) R2dD*E : 0.321 R2D*E : -0.628
γ1 : -0.89 (0.109) R2dN8 : 0.167 R2N8 : 0.109
σ : 0.87
deviance : 349.05
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.03
memory length : 4314
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.6
open length of G : 0.179

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
344.26 0.872 5.03 -0.292 0.0986 -3.08 -1.33 -5.61 -0.894 16.7 20.02 4313 18.6 0.161
375.33 0.909 4.86 -1.19 0.0931 0.71 -1.53 -- -1.07 16.7 20.02 4313 18.6 0.161
348.61 0.87 5.02 -0.271 0.0901 -3.09 -- -5.53 -0.89 16.9 20.02 4314 18.6 0.178
379.25 0.907 4.87 -1.07 0.0287 -0.256 -- -- -1.09 16.1 14.76 38799 19.8 0.25
349.05 0.87 5.02 -0.264 -- -3.13 -- -5.61 -0.89 -- 20.03 4314 18.6 0.179
375.88 0.909 4.86 -1.19 0.101 -- -1.51 -- -1.07 16.7 -- -- -- --
381.9 0.915 4.87 -1.2 0.0909 -- -- -- -1.08 16.5 -- -- -- --
378.92 0.907 4.84 -0.797 -- -0.484 -- -- -0.953 -- 15.65 47520 20.1 0.0499
381.75 0.91 4.79 -- 0.0791 -0.991 -- -- -0.725 16.3 19.15 47520 19.8 0.0367
382.34 0.914 4.87 -1.2 -- -- -- -- -1.08 -- -- -- -- --
419.7 0.958 4.84 -- 0.114 -- -- -- -0.947 16.2 -- -- -- --
380.43 0.908 4.78 -- -- -1.01 -- -- -0.753 -- 16.3 47520 23.2 0.249
420.4 0.957 4.84 -- -- -- -- -- -0.95 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 351.01 temperature 20 4320 > th dose independent rect. 18 1
2 352.33 humidity 90 30 < th dose dependent rect. 24 4
4 352.58 atmosphere 995 14400 < th dose dependent rect. 14 1
14 353.57 temperature 20 720 > th dose independent rect. 19 6
18 354.16 temperature 20 4320 < th dose independent rect. 18 3
19 354.26 temperature 20 720 > th dose independent rect. 20 3
38 354.88 temperature 20 720 < th dose independent rect. 12 14
39 354.89 temperature 20 720 < th dose independent rect. 18 8
40 354.89 temperature 20 720 < th dose independent rect. 16 10
42 354.90 humidity 80 30 < th dose independent rect. 24 4
51 354.99 temperature 20 720 > th dose dependent rect. 1 3
57 355.13 wind 3 1440 < th dose independent rect. 24 8
58 355.14 atmosphere 995 14400 < th dose independent rect. 14 1
79 355.30 temperature 20 720 < th dose independent sin 19 NA
81 355.31 temperature 20 270 < th dose dependent rect. 24 1
86 355.48 wind 3 1440 > th dose independent rect. 24 8
100 356.07 atmosphere 995 14400 > th dose independent rect. 8 5
110 356.47 temperature 20 4320 < th dose independent rect. 16 5
116 356.60 temperature 20 720 > th dose independent rect. 12 14
128 356.80 humidity 80 270 < th dose independent rect. 23 3
148 357.03 humidity 80 270 < th dose independent rect. 24 1
163 357.07 radiation 20 30 < th dose independent rect. 19 18
165 357.10 temperature 20 4320 > th dose independent rect. 18 3
174 357.18 temperature 20 720 < th dose independent rect. 18 3
183 357.30 wind 3 1440 < th dose independent rect. 24 5
184 357.31 temperature 20 270 > th dose dependent rect. 1 12
188 357.34 radiation 20 4320 < th dose independent rect. 6 1
201 357.40 humidity 80 720 > th dose independent rect. 20 6
202 357.40 humidity 80 720 < th dose dependent rect. 20 6
230 357.69 temperature 20 720 > th dose independent rect. 14 10
234 357.75 wind 3 1440 < th dose independent rect. 24 1
255 357.90 radiation 20 4320 > th dose dependent rect. 6 1
272 357.93 humidity 80 720 < th dose dependent rect. 21 1
276 357.97 wind 1 720 < th dose independent rect. 4 1
278 358.00 humidity 80 270 < th dose independent rect. 21 6
292 358.11 atmosphere 995 14400 > th dose independent rect. 8 7
298 358.16 radiation 20 4320 < th dose independent rect. 21 10
320 358.21 wind 3 1440 > th dose independent rect. 24 5
327 358.24 wind 3 1440 > th dose independent rect. 21 11
365 358.51 humidity 80 270 > th dose independent rect. 20 12
367 358.53 radiation 20 14400 > th dose independent rect. 6 1
389 358.65 radiation 20 4320 < th dose independent rect. 24 7
394 358.67 temperature 20 720 < th dose dependent rect. 12 13
400 358.71 temperature 20 270 < th dose independent rect. 24 1
406 358.76 wind 3 1440 > th dose independent rect. 24 1
425 358.84 temperature 20 720 < th dose dependent sin 19 NA
427 358.85 temperature 20 4320 > th dose independent rect. 16 5
452 358.90 atmosphere 995 14400 > th dose independent rect. 12 4
460 358.93 atmosphere 995 14400 > th dose independent rect. 15 1
469 358.99 wind 3 720 > th dose independent rect. 3 3
475 359.04 temperature 20 4320 > th dose independent rect. 20 1
485 359.08 wind 1 1440 > th dose dependent rect. 24 8
514 359.23 radiation 20 4320 < th dose independent rect. 18 13
535 359.31 humidity 50 720 > th dose dependent rect. 20 7
555 359.43 radiation 20 4320 < th dose independent rect. 2 5
596 359.62 wind 7 1440 < th dose dependent rect. 24 8
605 359.65 wind 5 1440 < th dose dependent rect. 24 5
608 359.67 humidity 80 720 > th dose independent rect. 21 2
610 359.68 atmosphere 1000 4320 > th dose independent rect. 9 1
614 359.69 atmosphere 1000 4320 < th dose independent rect. 9 1
616 359.69 temperature 20 720 > th dose dependent sin 8 NA
624 359.72 temperature 20 720 > th dose dependent rect. 19 16
639 359.82 atmosphere 1000 4320 < th dose dependent rect. 9 2
671 359.92 wind 1 1440 > th dose dependent rect. 24 5
674 359.94 temperature 20 720 > th dose dependent rect. 19 18
679 359.96 humidity 80 10 < th dose independent rect. 20 9
686 359.99 temperature 20 720 > th dose independent sin 18 NA
691 360.00 humidity 60 270 > th dose dependent rect. 19 13
720 360.08 humidity 80 270 > th dose independent rect. 11 21
778 360.19 humidity 80 720 > th dose independent rect. 11 16
814 360.27 temperature 20 270 < th dose dependent rect. 6 22
839 360.33 wind 3 1440 > th dose dependent rect. 21 12
855 360.39 wind 1 90 < th dose dependent rect. 4 8
937 360.60 radiation 1 14400 < th dose dependent rect. 1 1
940 360.61 wind 1 90 < th dose dependent rect. 4 6
969 360.72 wind 9 43200 > th dose dependent rect. 18 3