Os01g0916100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0916100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 331.02 | 0.855 | 6.83 | 3.84 | 0.124 | -1.67 | 1.83 | 0.494 | 1.83 | 2.55 | 20.02 | 5509 | 3.93 | 0.248 |
| 331.36 | 0.848 | 6.82 | 4.01 | 0.139 | -1.68 | 1.82 | -- | 1.87 | 2.54 | 19.98 | 5397 | 3.98 | 0.266 |
| 342.28 | 0.862 | 6.83 | 3.91 | 0.131 | -1.7 | -- | 0.187 | 1.84 | 3.16 | 20 | 5400 | 3.97 | 0.283 |
| 342.09 | 0.861 | 6.82 | 4.03 | 0.188 | -1.68 | -- | -- | 1.85 | 3.85 | 20 | 5401 | 3.95 | 0.275 |
| 343.05 | 0.863 | 6.82 | 3.9 | -- | -1.68 | -- | 0.195 | 1.86 | -- | 20.03 | 5398 | 4.02 | 0.0667 |
| 458.02 | 1 | 6.64 | 5.22 | 0.281 | -- | 1.55 | -- | 2.59 | 2.44 | -- | -- | -- | -- |
| 466.13 | 1.01 | 6.65 | 5.17 | 0.313 | -- | -- | -- | 2.58 | 3.77 | -- | -- | -- | -- |
| 343.17 | 0.863 | 6.81 | 3.99 | -- | -1.66 | -- | -- | 1.89 | -- | 20.05 | 5443 | 4.03 | 0.0816 |
| 396.91 | 0.928 | 7.02 | -- | 0.208 | -4.24 | -- | -- | 0.933 | 1.73 | 17.31 | 47520 | 4.98 | 0.0833 |
| 471.53 | 1.01 | 6.65 | 5.19 | -- | -- | -- | -- | 2.59 | -- | -- | -- | -- | -- |
| 1171.49 | 1.6 | 6.78 | -- | 0.415 | -- | -- | -- | 2.01 | 3.65 | -- | -- | -- | -- |
| 395.5 | 0.926 | 7.05 | -- | -- | -4.35 | -- | -- | 0.86 | -- | 18.5 | 47520 | 5.82 | 0.133 |
| 1181.04 | 1.6 | 6.78 | -- | -- | -- | -- | -- | 2.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 302.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 2 | 305.63 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 3 | 306.74 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 4 | 306.74 | radiation | 10 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 5 | 307.55 | radiation | 10 | 43200 | < th | dose dependent | rect. | 15 | 19 |
| 8 | 307.85 | radiation | 20 | 43200 | < th | dose dependent | rect. | 15 | 5 |
| 9 | 307.85 | radiation | 20 | 43200 | < th | dose dependent | rect. | 15 | 7 |
| 12 | 307.86 | radiation | 20 | 43200 | < th | dose dependent | rect. | 15 | 10 |
| 22 | 308.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 23 | 308.33 | radiation | 10 | 43200 | < th | dose dependent | sin | 13 | NA |
| 24 | 308.34 | radiation | 40 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 71 | 309.19 | radiation | 1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 165 | 310.38 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 249 | 311.14 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 261 | 311.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 271 | 311.60 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 273 | 311.61 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 302 | 311.95 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 415 | 314.04 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 463 | 314.62 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 466 | 314.74 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 480 | 314.74 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 21 |
| 484 | 314.74 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 23 |
| 486 | 314.75 | radiation | 10 | 43200 | < th | dose dependent | no | NA | NA |
| 552 | 315.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 612 | 315.85 | radiation | 30 | 43200 | > th | dose independent | sin | 13 | NA |
| 660 | 316.15 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 662 | 316.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 678 | 316.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 694 | 316.33 | radiation | 1 | 43200 | > th | dose dependent | sin | 14 | NA |
| 696 | 316.43 | radiation | 30 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 716 | 316.79 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 751 | 317.21 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 790 | 317.61 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 823 | 318.01 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 825 | 318.07 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 830 | 318.21 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 13 |
| 833 | 318.23 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 860 | 318.45 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 880 | 318.70 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 883 | 318.74 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 886 | 318.74 | radiation | 10 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 933 | 318.99 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 944 | 319.06 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 972 | 319.29 | radiation | 30 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 976 | 319.30 | radiation | 30 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 977 | 319.30 | radiation | 30 | 43200 | < th | dose independent | rect. | 14 | 11 |