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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0916000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0402) R2 : 0.613
β1 : 0.748 (0.151) R2dD : 0.0227 R2D : -0.193
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.87 (0.314) R2dE : 0.0323 R2E : -0.176
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.29 (0.0862) R2dN8 : 0.812 R2N8 : 0.545
σ : 0.752
deviance : 260.74
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.8883
memory length : 577
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.04 0.753 3.43 0.791 0.158 -1.42 0.943 -1.28 2.29 19.3 0.7365 587 -- --
257.21 0.747 3.44 0.768 0.187 -1.73 0.947 -- 2.3 19.4 0.6354 584 -- --
259.31 0.75 3.43 0.766 0.163 -1.54 -- -1.16 2.29 18.4 0.8626 573 -- --
259.36 0.75 3.44 0.752 0.165 -1.82 -- -- 2.3 18.5 0.7518 577 -- --
260.67 0.752 3.43 0.766 -- -1.53 -- -1.32 2.29 -- 0.9691 571 -- --
275.32 0.778 3.45 0.983 0.183 -- 1.1 -- 2.25 20.5 -- -- -- --
279.15 0.782 3.45 0.95 0.187 -- -- -- 2.25 19.8 -- -- -- --
260.74 0.752 3.44 0.748 -- -1.87 -- -- 2.29 -- 0.8883 577 -- --
273.49 0.77 3.46 -- 0.149 -2.15 -- -- 2.23 17.9 0.649 581 -- --
281.05 0.783 3.45 0.947 -- -- -- -- 2.25 -- -- -- -- --
302.91 0.814 3.48 -- 0.181 -- -- -- 2.14 20.2 -- -- -- --
274.66 0.772 3.45 -- -- -2.21 -- -- 2.22 -- 0.7016 560 -- --
304.72 0.815 3.47 -- -- -- -- -- 2.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 245.90 temperature 30.0 43200 > th dose dependent rect. 18 15
2 245.96 temperature 30.0 43200 > th dose dependent rect. 18 1
31 248.21 temperature 30.0 43200 > th dose independent rect. 18 15
32 248.42 temperature 30.0 43200 > th dose dependent rect. 8 1
46 248.56 temperature 30.0 43200 < th dose independent rect. 18 15
47 248.83 temperature 30.0 43200 < th dose independent rect. 18 11
48 248.88 temperature 30.0 43200 > th dose independent rect. 18 1
64 248.97 temperature 30.0 43200 < th dose independent rect. 18 1
65 248.97 temperature 30.0 43200 < th dose independent rect. 18 4
70 249.00 temperature 30.0 43200 < th dose independent rect. 18 6
73 249.04 temperature 30.0 43200 > th dose independent rect. 8 1
102 249.07 temperature 30.0 43200 < th dose independent rect. 2 7
106 249.21 temperature 30.0 43200 < th dose independent rect. 8 1
107 249.29 temperature 30.0 43200 < th dose independent rect. 23 10
111 249.39 temperature 30.0 43200 < th dose independent rect. 21 12
148 251.17 wind 1.0 30 < th dose dependent rect. 2 2
149 251.37 radiation 10.0 43200 > th dose independent rect. 13 3
155 251.55 temperature 25.0 14400 > th dose dependent rect. 4 1
159 251.66 humidity 90.0 1440 > th dose independent rect. 13 1
171 252.03 humidity 90.0 1440 > th dose dependent rect. 13 1
186 252.08 humidity 90.0 1440 > th dose independent rect. 11 3
206 252.27 radiation 10.0 43200 > th dose independent rect. 11 7
250 252.50 wind 1.0 43200 > th dose dependent rect. 1 1
251 252.55 humidity 90.0 1440 > th dose dependent rect. 11 3
252 252.58 radiation 10.0 43200 > th dose independent sin 17 NA
284 252.95 wind 1.0 10 < th dose independent rect. 3 1
336 253.31 temperature 25.0 43200 > th dose independent rect. 4 1
354 253.48 temperature 25.0 43200 < th dose independent rect. 4 1
427 254.24 humidity 90.0 720 > th dose dependent rect. 9 12
475 254.42 precipitation 0.1 1440 < th dose independent rect. 14 1
477 254.42 precipitation 0.1 1440 < th dose dependent rect. 14 1
485 254.65 humidity 90.0 720 > th dose dependent rect. 11 10
502 254.68 humidity 90.0 720 > th dose dependent rect. 13 8
506 254.74 humidity 90.0 1440 < th dose independent rect. 13 1
512 254.84 humidity 90.0 720 > th dose dependent rect. 16 5
533 254.92 wind 9.0 43200 < th dose dependent rect. 1 1
565 255.02 wind 1.0 43200 > th dose dependent rect. 22 5
566 255.02 wind 1.0 30 < th dose dependent rect. 15 13
574 255.12 wind 1.0 720 < th dose independent rect. 16 3
601 255.33 wind 1.0 30 < th dose dependent rect. 17 11
603 255.33 wind 1.0 30 < th dose dependent rect. 11 17
605 255.37 wind 1.0 30 < th dose dependent rect. 8 20
615 255.41 wind 1.0 30 < th dose dependent rect. 21 7
632 255.43 humidity 80.0 720 > th dose dependent rect. 9 17
642 255.53 humidity 60.0 720 > th dose dependent rect. 16 11
643 255.55 temperature 30.0 43200 > th dose dependent sin 10 NA
653 255.64 precipitation 0.1 1440 > th dose independent rect. 14 1
655 255.64 precipitation 0.1 1440 > th dose dependent rect. 14 1
660 255.65 precipitation 0.1 720 < th dose independent rect. 13 16
662 255.65 precipitation 0.1 720 < th dose dependent rect. 13 16
667 255.72 humidity 90.0 720 > th dose dependent rect. 19 2
669 255.72 precipitation 0.1 720 > th dose dependent rect. 18 23
696 255.81 humidity 80.0 720 > th dose dependent sin 19 NA
706 255.90 wind 9.0 43200 < th dose dependent rect. 22 5
708 255.91 humidity 90.0 720 > th dose independent sin 20 NA
726 255.97 precipitation 0.1 720 < th dose independent rect. 3 17
728 255.97 precipitation 0.1 720 < th dose dependent rect. 3 17
732 256.03 humidity 90.0 720 > th dose independent rect. 9 14
748 256.10 humidity 90.0 720 > th dose independent rect. 16 7
754 256.17 wind 3.0 43200 < th dose dependent rect. 5 1
770 256.26 humidity 90.0 720 < th dose independent rect. 8 16
781 256.34 humidity 90.0 720 > th dose independent rect. 11 12
796 256.42 humidity 90.0 720 > th dose independent rect. 13 10
817 256.54 humidity 70.0 43200 > th dose dependent rect. 9 1
821 256.56 humidity 90.0 720 > th dose independent rect. 16 5
826 256.58 precipitation 0.1 720 > th dose independent rect. 18 23
843 256.59 wind 5.0 4320 < th dose dependent rect. 3 1
873 256.66 humidity 90.0 1440 < th dose independent rect. 11 3
900 256.71 wind 3.0 4320 < th dose independent rect. 3 1
954 256.91 humidity 80.0 720 < th dose independent rect. 10 13
994 257.04 wind 1.0 720 < th dose dependent rect. 16 2