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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0915300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0209) R2 : 0.0181
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.127 (0.044) R2dN8 : 0.0233 R2N8 : 0.0181
σ : 0.394
deviance : 71.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.07 0.373 3.01 -0.442 0.212 5.46 -0.268 -13.1 0.103 7.37 50.38 6 -- --
65.41 0.38 2.98 -0.33 0.193 0.502 -0.314 -- 0.0926 7.69 50.38 6 -- --
63.24 0.37 3.01 -0.444 0.211 5.36 -- -13 0.105 7.65 50.44 5 -- --
64.59 0.374 2.97 -0.331 0.202 0.569 -- -- 0.102 7.73 55.53 9 -- --
65.62 0.377 3.02 -0.436 -- 5.11 -- -12.2 0.107 -- 50.47 5 -- --
66.18 0.381 2.98 -0.309 0.197 -- -0.259 -- 0.0897 7.91 -- -- -- --
66.35 0.381 2.98 -0.315 0.196 -- -- -- 0.0905 8.35 -- -- -- --
66.71 0.38 2.98 -0.331 -- 0.584 -- -- 0.106 -- 55 8 -- --
67.47 0.383 2.97 -- 0.198 0.51 -- -- 0.142 7.69 56.4 8 -- --
68.49 0.387 2.98 -0.313 -- -- -- -- 0.0926 -- -- -- -- --
68.96 0.388 2.97 -- 0.195 -- -- -- 0.126 8.46 -- -- -- --
69.57 0.388 2.97 -- -- 0.511 -- -- 0.143 -- 55.93 8 -- --
71.08 0.394 2.97 -- -- -- -- -- 0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.40 temperature 25.0 10 > th dose independent rect. 4 3
4 61.65 humidity 50.0 10 < th dose independent sin 8 NA
6 61.76 humidity 50.0 10 < th dose independent rect. 17 19
10 61.85 radiation 10.0 10 > th dose independent rect. 17 14
11 62.04 atmosphere 1005.0 270 > th dose dependent rect. 1 7
12 62.05 humidity 90.0 90 < th dose independent rect. 6 1
13 62.09 humidity 50.0 10 < th dose dependent rect. 17 19
18 62.13 temperature 25.0 30 > th dose independent rect. 4 1
21 62.17 humidity 90.0 90 < th dose independent rect. 4 1
22 62.18 atmosphere 1005.0 90 > th dose dependent rect. 6 1
23 62.19 humidity 90.0 10 < th dose independent rect. 4 1
25 62.20 temperature 25.0 90 > th dose dependent rect. 4 1
29 62.21 atmosphere 1005.0 30 > th dose dependent rect. 4 4
33 62.28 atmosphere 1005.0 270 > th dose dependent rect. 3 2
38 62.41 humidity 50.0 10 < th dose dependent sin 9 NA
39 62.41 wind 1.0 30 > th dose dependent rect. 4 1
42 62.47 humidity 50.0 10 > th dose independent sin 10 NA
44 62.48 radiation 10.0 90 > th dose dependent rect. 17 14
47 62.53 radiation 1.0 30 > th dose dependent rect. 6 1
48 62.54 wind 3.0 30 < th dose dependent rect. 6 1
56 62.62 humidity 90.0 10 < th dose independent rect. 1 7
57 62.62 humidity 90.0 90 < th dose dependent rect. 4 1
59 62.66 temperature 25.0 10 > th dose independent rect. 6 1
61 62.69 atmosphere 1005.0 90 > th dose dependent rect. 3 8
69 62.73 wind 9.0 1440 < th dose independent rect. 7 1
70 62.73 temperature 10.0 1440 > th dose independent rect. 7 1
74 62.73 temperature 30.0 1440 < th dose independent rect. 7 1
78 62.73 humidity 50.0 1440 > th dose independent rect. 7 1
83 62.73 atmosphere 995.0 1440 > th dose independent rect. 7 1
84 62.73 atmosphere 1015.0 1440 < th dose independent rect. 7 1
87 62.73 temperature 10.0 1440 > th dose independent rect. 8 23
107 62.75 humidity 80.0 10 < th dose dependent rect. 17 15
111 62.79 humidity 90.0 10 < th dose independent rect. 4 4
119 62.84 wind 1.0 30 > th dose independent rect. 4 1
120 62.84 humidity 80.0 30 > th dose dependent rect. 6 1
121 62.85 radiation 1.0 30 > th dose independent rect. 6 1
126 62.87 wind 3.0 30 < th dose independent rect. 6 1
130 62.88 atmosphere 1005.0 90 > th dose independent rect. 6 1
137 62.91 humidity 80.0 30 > th dose independent rect. 6 1
142 62.93 temperature 15.0 30 > th dose dependent rect. 6 1
157 62.97 temperature 10.0 30 > th dose independent rect. 6 1
159 62.97 temperature 30.0 30 < th dose independent rect. 6 1
160 62.97 humidity 50.0 30 > th dose independent rect. 6 1
164 62.97 atmosphere 995.0 30 > th dose independent rect. 6 1
166 62.97 atmosphere 1015.0 30 < th dose independent rect. 6 1
167 62.97 radiation 20.0 30 < th dose independent rect. 6 1
170 62.97 precipitation 0.1 30 < th dose independent rect. 6 1
171 62.97 temperature 10.0 30 > th dose independent rect. 7 23
173 62.97 precipitation 0.1 30 < th dose dependent rect. 6 1
176 62.99 wind 1.0 30 > th dose independent rect. 6 1
253 63.09 humidity 90.0 10 < th dose dependent rect. 4 1
260 63.12 humidity 50.0 30 > th dose independent rect. 5 23
261 63.12 radiation 40.0 30 < th dose dependent rect. 6 1
262 63.15 humidity 50.0 10 < th dose independent rect. 17 1
281 63.16 atmosphere 1005.0 10 > th dose dependent rect. 4 8
285 63.17 atmosphere 1005.0 30 > th dose dependent rect. 4 1
291 63.19 humidity 90.0 90 < th dose dependent rect. 6 1
305 63.26 temperature 30.0 30 < th dose dependent rect. 6 1
320 63.31 atmosphere 1005.0 30 > th dose dependent rect. 4 13
377 63.40 atmosphere 1005.0 30 > th dose independent rect. 4 1
380 63.41 wind 7.0 1440 < th dose independent rect. 5 1
382 63.41 temperature 10.0 1440 > th dose independent rect. 5 1
385 63.41 temperature 30.0 1440 < th dose independent rect. 5 1
389 63.41 humidity 50.0 1440 > th dose independent rect. 5 1
399 63.41 atmosphere 995.0 1440 > th dose independent rect. 5 1
400 63.41 atmosphere 1015.0 1440 < th dose independent rect. 5 1
401 63.41 radiation 20.0 1440 < th dose independent rect. 5 1
410 63.41 temperature 10.0 1440 > th dose independent rect. 6 23
425 63.43 humidity 90.0 10 < th dose dependent rect. 1 7
431 63.44 atmosphere 1015.0 30 < th dose dependent rect. 6 1
438 63.45 temperature 10.0 30 > th dose dependent rect. 4 1
443 63.46 wind 3.0 30 < th dose independent rect. 4 1
447 63.47 temperature 10.0 30 > th dose independent rect. 4 1
449 63.47 temperature 30.0 30 < th dose independent rect. 4 1
450 63.47 humidity 50.0 30 > th dose independent rect. 4 1
454 63.47 atmosphere 995.0 30 > th dose independent rect. 4 1
456 63.47 atmosphere 1010.0 30 < th dose independent rect. 4 1
458 63.47 radiation 1.0 30 < th dose independent rect. 4 1
463 63.47 precipitation 0.1 30 < th dose independent rect. 4 1
465 63.47 temperature 10.0 30 > th dose independent rect. 5 23
466 63.47 humidity 50.0 10 < th dose dependent sin 15 NA
467 63.47 wind 5.0 30 < th dose dependent rect. 4 1
470 63.47 radiation 1.0 30 < th dose dependent rect. 4 1
475 63.47 precipitation 0.1 30 < th dose dependent rect. 4 1
487 63.48 humidity 50.0 30 > th dose dependent rect. 4 1
489 63.48 humidity 50.0 10 < th dose dependent rect. 16 2
507 63.48 atmosphere 1000.0 30 > th dose dependent rect. 4 16
514 63.49 humidity 90.0 10 < th dose dependent rect. 6 2
556 63.53 atmosphere 995.0 30 > th dose independent rect. 5 23
558 63.53 atmosphere 1015.0 30 < th dose dependent rect. 4 1
577 63.54 temperature 30.0 30 < th dose dependent rect. 4 1
580 63.55 humidity 90.0 10 < th dose independent rect. 2 3
605 63.59 atmosphere 1005.0 30 > th dose independent rect. 4 9
610 63.59 radiation 10.0 30 < th dose dependent rect. 5 23
621 63.61 humidity 80.0 30 < th dose dependent rect. 19 13
628 63.63 humidity 50.0 10 > th dose independent sin 19 NA
631 63.63 humidity 50.0 10 < th dose dependent no NA NA
636 63.63 humidity 50.0 10 < th dose dependent rect. 11 7
880 63.70 humidity 50.0 10 > th dose independent sin 15 NA
881 63.70 humidity 50.0 10 > th dose independent no NA NA
882 63.70 precipitation 0.1 30 < th dose independent rect. 5 23
885 63.70 precipitation 0.1 30 < th dose dependent rect. 5 23
895 63.72 atmosphere 1005.0 30 > th dose independent rect. 4 4
910 63.73 humidity 50.0 30 > th dose dependent rect. 5 23
916 63.74 wind 1.0 1440 < th dose dependent rect. 15 1
922 63.75 humidity 50.0 10 < th dose independent no NA NA
924 63.75 humidity 50.0 10 < th dose independent rect. 11 7