FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0914600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.039) R2 : 0.287
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.34 (0.101) R2dC : 0.276 R2C : 0.273
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.214 (0.0819) R2dN8 : 0.0138 R2N8 : 0.0112
σ : 0.734
deviance : 246.22
__
_____
C
peak time of C : 19.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.34 0.707 3.46 -0.269 1.06 1.36 0.501 -4.64 -0.176 19.5 30 351 -- --
228.05 0.703 3.4 0.151 1.04 0.895 0.483 -- -0.0944 19.4 30.1 350 -- --
226.97 0.702 3.45 -0.232 1.05 1.33 -- -4.02 -0.169 19.5 30.06 350 -- --
228.07 0.703 3.41 0.118 1.07 0.872 -- -- -0.139 19.4 30 352 -- --
267.49 0.762 3.43 -0.332 -- 1.79 -- -3.38 -0.267 -- 29.55 430 -- --
242.67 0.73 3.43 0.256 1.34 -- 0.886 -- -0.19 19 -- -- -- --
244.72 0.733 3.43 0.239 1.34 -- -- -- -0.188 19.1 -- -- -- --
264.84 0.758 3.43 -0.0189 -- 1.39 -- -- -0.342 -- 28.53 522 -- --
228.06 0.703 3.42 -- 1.05 0.853 -- -- -0.173 19.5 29.6 356 -- --
339.63 0.861 3.4 0.212 -- -- -- -- -0.212 -- -- -- -- --
246.22 0.734 3.43 -- 1.34 -- -- -- -0.214 19.1 -- -- -- --
264.85 0.758 3.43 -- -- 1.39 -- -- -0.34 -- 28.53 522 -- --
340.82 0.862 3.4 -- -- -- -- -- -0.236 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 212.29 temperature 30.0 270 < th dose independent rect. 7 18
2 212.31 temperature 30.0 270 < th dose independent rect. 8 16
5 213.79 temperature 15.0 270 > th dose independent rect. 20 16
6 214.05 precipitation 0.1 270 < th dose independent rect. 12 8
7 214.05 precipitation 0.1 270 < th dose dependent rect. 12 8
8 214.24 wind 1.0 270 > th dose independent rect. 12 8
9 214.41 temperature 15.0 270 > th dose independent rect. 8 16
14 214.68 wind 7.0 270 < th dose independent rect. 12 8
26 215.89 temperature 10.0 270 > th dose dependent rect. 12 8
30 216.02 temperature 10.0 270 > th dose independent rect. 12 8
31 216.02 atmosphere 1015.0 270 < th dose independent rect. 12 8
33 216.02 atmosphere 995.0 270 > th dose independent rect. 20 16
34 216.04 precipitation 0.1 270 < th dose independent rect. 12 19
35 216.04 precipitation 0.1 270 < th dose dependent rect. 12 19
37 216.26 wind 9.0 270 < th dose independent rect. 20 16
38 216.26 temperature 30.0 270 < th dose independent rect. 20 16
40 216.33 temperature 10.0 270 > th dose dependent rect. 19 7
42 216.39 wind 9.0 270 < th dose independent rect. 12 19
46 216.45 humidity 70.0 270 > th dose independent rect. 24 8
47 216.47 radiation 40.0 270 < th dose independent rect. 7 6
49 216.47 precipitation 0.1 270 < th dose independent rect. 20 16
51 216.47 precipitation 0.1 270 < th dose dependent rect. 20 16
59 216.72 atmosphere 1015.0 270 < th dose independent rect. 20 16
60 216.73 radiation 30.0 270 < th dose independent rect. 24 8
69 216.82 humidity 50.0 270 > th dose independent rect. 7 17
71 216.86 precipitation 0.1 270 < th dose independent rect. 24 8
73 216.86 precipitation 0.1 270 < th dose dependent rect. 24 8
74 216.90 wind 9.0 270 < th dose independent rect. 24 8
75 216.90 temperature 10.0 270 > th dose independent rect. 24 8
76 216.90 temperature 30.0 270 < th dose independent rect. 24 8
77 216.90 humidity 50.0 270 > th dose independent rect. 24 8
79 216.90 atmosphere 995.0 270 > th dose independent rect. 24 8
84 216.92 atmosphere 1015.0 270 < th dose independent rect. 24 8
99 217.06 temperature 30.0 270 < th dose independent rect. 7 6
106 217.22 radiation 40.0 270 < th dose independent rect. 19 17
111 217.30 humidity 50.0 270 > th dose independent rect. 20 16
112 217.31 wind 1.0 10 > th dose independent rect. 13 7
113 217.31 radiation 40.0 270 < th dose dependent rect. 24 8
120 217.36 temperature 10.0 270 > th dose independent rect. 7 5
121 217.36 atmosphere 995.0 270 > th dose independent rect. 7 5
122 217.36 atmosphere 1015.0 270 < th dose independent rect. 7 5
123 217.36 temperature 10.0 270 > th dose independent rect. 12 19
126 217.41 precipitation 0.1 270 < th dose independent rect. 7 5
128 217.41 precipitation 0.1 270 < th dose dependent rect. 7 5
131 217.44 radiation 1.0 270 > th dose independent rect. 12 19
132 217.47 radiation 40.0 270 < th dose independent rect. 8 3
133 217.47 wind 9.0 270 < th dose independent rect. 7 5
134 217.48 temperature 15.0 10 > th dose independent rect. 20 17
154 217.62 atmosphere 1015.0 270 < th dose independent rect. 8 16
161 217.70 atmosphere 995.0 270 > th dose independent rect. 8 16
215 218.12 humidity 50.0 270 > th dose independent rect. 7 5
224 218.20 temperature 15.0 270 > th dose independent rect. 19 6
227 218.22 radiation 1.0 270 < th dose dependent rect. 16 11
235 218.27 radiation 1.0 270 < th dose dependent sin 15 NA
244 218.30 radiation 1.0 270 > th dose independent rect. 7 5
259 218.38 wind 1.0 270 > th dose independent rect. 20 16
277 218.56 radiation 1.0 270 < th dose independent rect. 16 11
280 218.57 humidity 50.0 270 > th dose dependent rect. 23 9
293 218.68 radiation 40.0 270 < th dose independent rect. 8 17
296 218.69 temperature 10.0 30 > th dose dependent rect. 20 9
304 218.70 radiation 40.0 270 < th dose dependent rect. 8 17
313 218.76 temperature 10.0 90 > th dose dependent rect. 20 17
314 218.77 temperature 15.0 10 > th dose independent rect. 9 16
323 218.86 wind 1.0 270 > th dose independent rect. 7 5
324 218.86 atmosphere 1010.0 270 < th dose independent rect. 19 6
334 218.88 radiation 1.0 270 < th dose dependent rect. 7 19
335 218.89 wind 9.0 270 < th dose independent rect. 8 16
347 218.93 precipitation 0.1 270 < th dose independent rect. 8 16
349 218.93 precipitation 0.1 270 < th dose dependent rect. 8 16
357 218.97 radiation 1.0 270 < th dose dependent rect. 6 21
410 219.14 humidity 70.0 270 > th dose independent rect. 8 17
440 219.31 radiation 1.0 270 < th dose independent sin 15 NA
445 219.32 radiation 40.0 270 < th dose independent rect. 9 1
451 219.34 temperature 30.0 270 < th dose dependent rect. 1 6
452 219.36 radiation 1.0 270 > th dose independent sin 15 NA
463 219.40 radiation 1.0 270 < th dose independent rect. 7 19
502 219.58 humidity 90.0 270 < th dose independent rect. 12 7
512 219.61 temperature 15.0 10 > th dose independent rect. 11 14
522 219.67 atmosphere 1015.0 270 < th dose dependent rect. 24 7
534 219.73 temperature 30.0 270 < th dose independent rect. 17 9
542 219.75 wind 9.0 270 < th dose independent rect. 10 23
544 219.75 temperature 10.0 10 > th dose dependent rect. 20 7
563 219.82 wind 1.0 270 > th dose independent rect. 8 16
603 219.97 wind 9.0 270 < th dose dependent rect. 7 5
609 220.00 atmosphere 995.0 270 > th dose independent rect. 12 8
613 220.01 wind 9.0 10 < th dose independent rect. 20 17
639 220.12 atmosphere 995.0 270 > th dose independent rect. 12 19
652 220.19 temperature 10.0 10 > th dose independent rect. 13 7
654 220.19 atmosphere 1010.0 10 < th dose independent rect. 13 7
657 220.19 atmosphere 995.0 10 > th dose independent rect. 20 17
709 220.33 temperature 10.0 1440 > th dose independent rect. 14 7
712 220.33 radiation 1.0 270 > th dose independent rect. 12 7
724 220.33 temperature 10.0 1440 > th dose independent rect. 21 17
727 220.33 atmosphere 995.0 1440 > th dose independent rect. 21 17
758 220.43 wind 1.0 270 > th dose independent rect. 19 8
785 220.51 precipitation 0.1 270 < th dose independent rect. 2 17
789 220.51 precipitation 0.1 270 < th dose dependent rect. 2 17
827 220.66 wind 9.0 270 < th dose independent rect. 2 17
831 220.67 atmosphere 1015.0 10 < th dose independent rect. 20 17
882 220.81 radiation 40.0 270 < th dose independent rect. 14 17
915 220.90 radiation 40.0 270 < th dose dependent rect. 8 3
971 221.08 atmosphere 1010.0 30 < th dose independent rect. 20 5
1000 221.15 atmosphere 1010.0 10 < th dose independent rect. 20 7