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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0914000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.0524) R2 : 0.486
β1 : -0.204 (0.203) R2dD : 0.00106 R2D : 0.00149
β2 : 2.24 (0.123) R2dC : 0.383 R2C : 0.399
β3 : 4.27 (0.56) R2dE : 0.174 R2E : -0.00129
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 33.4 (4.86) R2dD*E : 0.14 R2D*E : -0.136
γ1 : -0.0593 (0.113) R2dN8 : 0.000451 R2N8 : -0.00653
σ : 0.963
deviance : 427.26
__
_____
C
peak time of C : 0.258
E
wheather : wind
threshold : 7
memory length : 30
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
425.62 0.961 4.33 -0.204 2.24 4.27 -0.613 33.4 -0.0593 0.258 7 30 20 1
470.1 1.02 4.28 -0.711 2.25 1.29 -0.416 -- -0.0521 0.227 29.67 5 20.2 1.5
427.26 0.963 4.33 -0.204 2.24 4.27 -- 33.4 -0.0593 0.258 7 30 20 1
470.85 1.02 4.27 -0.695 2.25 1.31 -- -- -0.0512 0.229 7 30 20 1
737.87 1.27 4.3 -0.114 -- 5.2 -- 33.5 -0.0984 -- 15.03 37 20 1.03
481.88 1.03 4.26 -0.715 2.31 -- -0.49 -- 0.048 0.091 -- -- -- --
482.92 1.03 4.25 -0.696 2.31 -- -- -- 0.0502 0.0938 -- -- -- --
499.22 1.04 4.12 -0.63 -- 1.77 -- -- 0.468 -- 9.413 635 18.6 1.57
481.41 1.02 4.25 -- 2.21 1.28 -- -- 0.0478 0.322 18.3 25 19.9 0.933
818.78 1.34 4.21 -0.622 -- -- -- -- 0.0836 -- -- -- -- --
495.67 1.04 4.24 -- 2.3 -- -- -- 0.128 0.077 -- -- -- --
491.52 1.03 4.07 -- -- 1.92 -- -- 0.436 -- 26.87 679 17.4 2.4
828.99 1.34 4.19 -- -- -- -- -- 0.153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 425.62 wind 7.0 30 < th dose independent rect. 20 1
2 425.62 temperature 20.0 30 > th dose independent rect. 20 1
3 425.70 wind 7.0 30 < th dose dependent rect. 20 1
5 425.74 temperature 15.0 30 > th dose dependent rect. 20 1
9 425.95 humidity 50.0 30 > th dose dependent rect. 20 1
11 425.98 humidity 80.0 30 > th dose independent rect. 20 1
12 426.01 atmosphere 1000.0 30 > th dose independent rect. 20 1
13 426.13 wind 1.0 30 > th dose independent rect. 20 1
15 426.13 temperature 10.0 30 > th dose independent rect. 20 1
17 426.13 temperature 30.0 30 < th dose independent rect. 20 1
18 426.13 humidity 50.0 30 > th dose independent rect. 20 1
22 426.13 atmosphere 1010.0 30 < th dose independent rect. 20 1
24 426.13 radiation 1.0 30 < th dose independent rect. 20 1
29 426.13 precipitation 0.1 30 < th dose independent rect. 20 1
30 426.13 temperature 10.0 30 > th dose independent rect. 21 23
31 426.13 radiation 1.0 30 < th dose dependent rect. 20 1
36 426.13 precipitation 0.1 30 < th dose dependent rect. 20 1
38 426.32 atmosphere 995.0 30 > th dose dependent rect. 20 1
46 427.10 atmosphere 1015.0 30 < th dose dependent rect. 20 1
47 427.10 radiation 10.0 1440 < th dose dependent rect. 21 1
51 427.40 humidity 90.0 30 < th dose independent rect. 20 1
55 427.69 temperature 10.0 1440 > th dose independent rect. 21 1
58 427.69 temperature 30.0 1440 < th dose independent rect. 21 1
62 427.69 humidity 50.0 1440 > th dose independent rect. 21 1
68 427.69 atmosphere 995.0 1440 > th dose independent rect. 21 1
69 427.69 radiation 1.0 1440 < th dose independent rect. 21 1
89 427.69 temperature 10.0 1440 > th dose independent rect. 22 23
92 428.20 wind 1.0 30 > th dose dependent rect. 20 1
100 429.89 humidity 90.0 30 < th dose dependent rect. 20 1
108 430.94 temperature 30.0 30 < th dose dependent rect. 20 1
141 433.29 wind 9.0 30 < th dose independent rect. 21 23
157 445.67 wind 9.0 1440 < th dose independent rect. 21 1
159 446.76 temperature 25.0 10 < th dose independent rect. 3 6
164 448.74 temperature 25.0 90 < th dose independent rect. 3 2
165 449.28 wind 7.0 30 < th dose independent rect. 14 13
166 449.72 humidity 90.0 90 > th dose independent rect. 3 2
168 450.07 humidity 90.0 30 > th dose independent rect. 3 6
174 450.73 wind 9.0 10 < th dose dependent rect. 14 13
175 450.80 humidity 90.0 90 > th dose dependent rect. 3 2
181 451.73 atmosphere 1015.0 90 < th dose dependent rect. 3 2
183 452.23 temperature 20.0 90 > th dose independent rect. 3 2
185 452.27 wind 3.0 90 < th dose dependent rect. 3 2
188 452.91 temperature 20.0 10 > th dose independent rect. 3 11
191 453.02 temperature 25.0 30 < th dose independent rect. 3 12
199 453.38 wind 9.0 10 < th dose independent rect. 3 11
200 453.59 precipitation 0.1 30 < th dose independent rect. 3 11
201 453.59 precipitation 0.1 30 < th dose dependent rect. 3 11
203 453.75 temperature 10.0 10 > th dose independent rect. 3 11
205 453.75 atmosphere 995.0 10 > th dose independent rect. 3 11
206 453.75 atmosphere 1015.0 10 < th dose independent rect. 3 11
208 453.75 temperature 10.0 10 > th dose independent rect. 14 13
218 454.28 temperature 20.0 90 > th dose dependent rect. 3 2
220 454.68 precipitation 0.1 720 < th dose independent rect. 16 5
221 454.68 precipitation 0.1 30 < th dose independent rect. 14 13
222 454.68 precipitation 0.1 720 < th dose dependent rect. 16 5
223 454.68 precipitation 0.1 30 < th dose dependent rect. 14 13
226 454.77 precipitation 0.1 720 < th dose independent rect. 9 19
227 454.77 precipitation 0.1 720 < th dose dependent rect. 9 19
228 454.79 radiation 40.0 10 < th dose independent rect. 14 13
231 455.00 humidity 50.0 270 > th dose independent rect. 16 13
232 455.05 precipitation 0.1 720 < th dose independent rect. 16 21
233 455.05 precipitation 0.1 720 < th dose dependent rect. 16 21
238 455.28 temperature 25.0 10 < th dose independent rect. 3 9
239 455.34 humidity 70.0 720 > th dose independent rect. 19 6
240 455.37 wind 9.0 90 < th dose independent rect. 5 22
246 455.66 humidity 70.0 720 > th dose independent rect. 19 14
247 455.71 temperature 10.0 90 > th dose dependent rect. 3 2
254 455.84 radiation 1.0 90 < th dose dependent rect. 3 2
255 455.84 radiation 1.0 90 < th dose dependent rect. 3 11
258 455.88 precipitation 0.1 90 < th dose independent rect. 3 2
259 455.88 precipitation 0.1 90 < th dose dependent rect. 3 2
262 456.08 humidity 90.0 90 > th dose dependent rect. 3 5
264 456.11 wind 9.0 90 < th dose independent rect. 3 2
265 456.11 temperature 10.0 90 > th dose independent rect. 3 2
268 456.11 humidity 50.0 90 > th dose independent rect. 3 2
271 456.11 atmosphere 995.0 90 > th dose independent rect. 3 2
272 456.11 atmosphere 1010.0 90 < th dose independent rect. 3 2
274 456.11 radiation 20.0 90 < th dose independent rect. 3 2
277 456.11 temperature 10.0 90 > th dose independent rect. 5 22
278 456.12 radiation 40.0 90 < th dose dependent rect. 3 2
285 456.19 precipitation 0.1 720 < th dose independent rect. 16 13
286 456.19 precipitation 0.1 720 < th dose dependent rect. 16 13
287 456.20 precipitation 0.1 720 < th dose independent rect. 10 9
288 456.20 precipitation 0.1 720 < th dose dependent rect. 10 9
289 456.21 radiation 1.0 90 < th dose independent rect. 3 2
293 456.34 precipitation 0.1 720 < th dose independent rect. 17 11
294 456.34 temperature 20.0 30 > th dose independent rect. 3 20
295 456.34 precipitation 0.1 720 < th dose dependent rect. 17 11
301 456.52 atmosphere 995.0 10 > th dose independent rect. 14 13
313 456.78 radiation 1.0 90 < th dose dependent rect. 3 18
322 456.97 temperature 25.0 30 < th dose dependent rect. 4 1
333 457.16 radiation 1.0 90 < th dose independent rect. 3 11
345 457.28 radiation 1.0 90 < th dose dependent rect. 3 5
348 457.30 precipitation 0.1 90 < th dose independent rect. 5 22
349 457.30 precipitation 0.1 90 < th dose dependent rect. 5 22
361 457.37 wind 3.0 90 < th dose independent rect. 3 2
384 457.64 humidity 90.0 10 > th dose independent rect. 3 3
385 457.64 precipitation 0.1 720 < th dose independent rect. 17 19
386 457.64 precipitation 0.1 720 < th dose dependent rect. 17 19
391 457.76 humidity 80.0 10 > th dose dependent rect. 3 3
400 457.85 precipitation 0.1 720 < th dose independent rect. 1 18
403 457.85 precipitation 0.1 720 < th dose dependent rect. 1 18
409 457.87 precipitation 0.1 720 < th dose independent rect. 7 14
410 457.87 precipitation 0.1 720 < th dose dependent rect. 7 14
415 457.92 temperature 25.0 10 < th dose independent rect. 4 1
430 458.23 temperature 30.0 90 < th dose independent rect. 18 11
436 458.35 wind 1.0 90 > th dose independent rect. 4 23
455 458.58 radiation 1.0 90 < th dose independent rect. 3 4
460 458.64 temperature 20.0 30 > th dose independent rect. 3 18
461 458.64 radiation 1.0 90 < th dose independent rect. 3 18
462 458.66 atmosphere 995.0 270 > th dose independent rect. 16 13
464 458.68 temperature 20.0 30 > th dose independent rect. 16 14
465 458.69 wind 1.0 10 < th dose independent rect. 3 3
469 458.72 radiation 1.0 90 < th dose dependent rect. 3 20
473 458.79 atmosphere 995.0 90 > th dose independent rect. 5 22
483 458.86 temperature 30.0 90 < th dose independent rect. 3 18
484 458.86 wind 9.0 30 < th dose dependent rect. 3 11
489 458.92 humidity 70.0 90 > th dose independent rect. 18 11
500 459.03 precipitation 0.1 720 < th dose independent rect. 1 20
501 459.03 precipitation 0.1 720 < th dose dependent rect. 1 20
505 459.12 humidity 60.0 720 > th dose independent rect. 4 5
528 459.33 humidity 90.0 720 < th dose independent rect. 17 2
530 459.36 radiation 20.0 270 < th dose independent rect. 16 13
538 459.40 wind 1.0 720 > th dose independent rect. 16 5
539 459.40 wind 9.0 270 < th dose independent rect. 5 11
543 459.44 humidity 70.0 10 > th dose independent rect. 16 14
551 459.50 humidity 50.0 720 > th dose dependent rect. 1 3
567 459.63 temperature 10.0 720 > th dose dependent rect. 17 4
579 459.66 temperature 10.0 720 > th dose dependent rect. 17 2
600 459.84 radiation 30.0 720 < th dose independent rect. 16 5
611 459.93 atmosphere 1010.0 10 < th dose independent rect. 3 5
615 459.95 temperature 30.0 90 < th dose independent rect. 16 13
619 460.00 temperature 10.0 30 > th dose dependent rect. 16 14
625 460.05 temperature 10.0 270 > th dose independent rect. 5 11
626 460.05 atmosphere 1015.0 270 < th dose independent rect. 5 11
627 460.05 temperature 10.0 270 > th dose independent rect. 16 13
628 460.05 radiation 40.0 270 < th dose independent rect. 16 13
635 460.09 precipitation 0.1 720 < th dose independent rect. 17 2
638 460.09 precipitation 0.1 720 < th dose dependent rect. 17 2
658 460.20 atmosphere 1015.0 10 < th dose dependent rect. 3 3
663 460.26 atmosphere 1015.0 720 < th dose independent rect. 16 5
664 460.26 wind 9.0 270 < th dose independent rect. 16 13
671 460.28 radiation 1.0 30 < th dose independent rect. 3 20
674 460.30 temperature 10.0 720 > th dose independent rect. 16 5
676 460.30 temperature 10.0 720 > th dose independent rect. 21 19
683 460.39 precipitation 0.1 720 < th dose independent rect. 1 3
684 460.39 precipitation 0.1 720 < th dose dependent rect. 1 3
690 460.45 wind 5.0 30 < th dose independent rect. 23 4
693 460.47 atmosphere 1010.0 90 < th dose independent rect. 5 13
706 460.57 temperature 25.0 270 < th dose independent rect. 24 11
715 460.62 wind 9.0 720 < th dose independent rect. 4 5
716 460.62 temperature 10.0 720 > th dose independent rect. 4 5
718 460.62 atmosphere 995.0 720 > th dose independent rect. 4 5
719 460.62 atmosphere 1015.0 720 < th dose independent rect. 4 5
720 460.62 temperature 10.0 720 > th dose independent rect. 9 19
722 460.63 precipitation 0.1 270 < th dose independent rect. 5 11
723 460.63 humidity 50.0 10 > th dose independent rect. 14 13
724 460.63 precipitation 0.1 270 < th dose dependent rect. 5 11
730 460.65 radiation 10.0 720 < th dose independent rect. 17 11
756 460.69 wind 9.0 720 < th dose dependent rect. 3 1
762 460.70 temperature 25.0 720 < th dose independent rect. 1 3
782 460.81 temperature 25.0 270 < th dose independent rect. 1 1
795 460.85 wind 9.0 720 < th dose independent rect. 21 19
797 460.89 humidity 70.0 720 > th dose independent rect. 22 9
803 460.94 radiation 40.0 720 < th dose independent rect. 4 5
804 460.94 temperature 10.0 720 > th dose dependent rect. 5 2
812 460.97 wind 7.0 10 < th dose dependent rect. 23 4
814 460.99 atmosphere 1010.0 10 < th dose independent rect. 3 20
823 461.03 atmosphere 1005.0 30 > th dose dependent rect. 16 5
844 461.17 temperature 10.0 720 > th dose independent rect. 13 3
845 461.17 atmosphere 1015.0 720 < th dose independent rect. 13 3
846 461.17 temperature 10.0 720 > th dose independent rect. 16 21
848 461.17 humidity 50.0 90 > th dose dependent rect. 18 11
862 461.23 atmosphere 1010.0 10 < th dose independent rect. 3 18
875 461.30 wind 9.0 720 < th dose independent rect. 13 3
882 461.34 precipitation 0.1 720 < th dose independent rect. 24 14
883 461.34 precipitation 0.1 720 < th dose dependent rect. 24 14
886 461.38 atmosphere 995.0 30 > th dose dependent rect. 4 1
887 461.40 temperature 10.0 720 > th dose independent rect. 1 3
889 461.40 humidity 50.0 720 > th dose independent rect. 1 3
892 461.40 atmosphere 995.0 720 > th dose independent rect. 1 3
893 461.40 radiation 1.0 720 < th dose independent rect. 1 3
898 461.40 temperature 10.0 720 > th dose independent rect. 4 21
900 461.40 radiation 1.0 720 < th dose dependent rect. 1 3
910 461.46 wind 9.0 270 < th dose independent rect. 12 12
913 461.47 precipitation 0.1 720 < th dose independent rect. 9 12
914 461.47 precipitation 0.1 720 < th dose dependent rect. 9 12
915 461.48 wind 9.0 720 < th dose independent rect. 1 3
924 461.54 temperature 15.0 270 > th dose independent rect. 24 12
925 461.54 precipitation 0.1 270 < th dose independent rect. 24 12
926 461.54 precipitation 0.1 270 < th dose dependent rect. 24 12
927 461.55 radiation 1.0 90 < th dose independent rect. 18 11
963 461.63 radiation 40.0 270 < th dose dependent rect. 16 13
964 461.64 humidity 50.0 720 > th dose independent rect. 19 15
968 461.67 wind 9.0 720 < th dose independent rect. 16 5
969 461.67 wind 9.0 720 < th dose independent rect. 22 9
972 461.67 wind 9.0 30 < th dose dependent rect. 21 6
973 461.69 radiation 1.0 90 < th dose dependent rect. 18 11
975 461.71 radiation 40.0 30 < th dose dependent rect. 14 13
976 461.72 wind 9.0 720 < th dose independent rect. 19 15
979 461.74 atmosphere 995.0 270 > th dose independent rect. 5 11
980 461.74 atmosphere 995.0 90 > th dose dependent rect. 11 10
984 461.75 temperature 20.0 30 > th dose dependent rect. 16 10