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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0913900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.0344) R2 : 0.654
β1 : -1.28 (0.175) R2dD : 0.0773 R2D : 0.227
β2 : 1.04 (0.0824) R2dC : 0.114 R2C : 0.116
β3 : 1.94 (0.18) R2dE : 0.215 R2E : 0.369
β4 : -3.91 (0.341) R2dD*C : 0.109 R2D*C : 0.0797
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.005 (0.0823) R2dN8 : 3.38e-05 R2N8 : -0.000493
σ : 0.617
deviance : 175.32
__
_____
C
peak time of C : 20.7
E
wheather : temperature
threshold : 18.6
memory length : 10102
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.62 0.616 3.55 -1.24 1 1.42 -3.99 -1.88 -0.00715 20.7 18.6 5571 -- --
175.32 0.617 3.56 -1.28 1.04 1.94 -3.91 -- 0.005 20.7 18.6 10102 -- --
222.43 0.695 3.54 -1.06 0.996 1.45 -- -2.04 0.00489 21.3 18.55 5636 -- --
226.38 0.701 3.62 -1.01 1.05 2.14 -- -- -0.0144 21.1 18.4 10248 -- --
281.02 0.781 3.54 -1.07 -- 1.49 -- -1.94 -0.0226 -- 18.6 5703 -- --
229.75 0.711 3.71 -2.57 1.01 -- -4.19 -- -0.482 20.6 -- -- -- --
285.31 0.791 3.71 -2.45 1.02 -- -- -- -0.486 21.1 -- -- -- --
283.92 0.785 3.58 -1.12 -- 2.18 -- -- -0.0143 -- 18.41 5730 -- --
227.69 0.703 3.56 -- 1.07 2.57 -- -- 0.242 21.1 17.4 24460 -- --
345.04 0.868 3.69 -2.44 -- -- -- -- -0.492 -- -- -- -- --
443.12 0.985 3.65 -- 1.02 -- -- -- -0.213 20.9 -- -- -- --
285.54 0.787 3.52 -- -- 2.64 -- -- 0.23 -- 16.6 39079 -- --
502.66 1.05 3.63 -- -- -- -- -- -0.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 166.31 humidity 70 43200 < th dose independent rect. 19 1
2 166.64 humidity 60 43200 < th dose independent rect. 18 10
5 166.76 humidity 70 43200 > th dose independent rect. 18 5
6 166.83 humidity 60 43200 < th dose independent rect. 18 8
8 166.86 humidity 70 43200 > th dose independent rect. 19 1
10 166.86 humidity 60 43200 > th dose independent rect. 18 10
14 166.89 humidity 70 43200 < th dose independent rect. 18 5
16 166.96 humidity 60 43200 > th dose independent rect. 18 8
21 167.02 humidity 80 43200 < th dose dependent rect. 19 1
25 167.06 humidity 60 43200 < th dose independent rect. 18 15
31 167.13 humidity 60 43200 < th dose independent rect. 16 14
32 167.14 humidity 60 43200 > th dose independent rect. 16 14
49 167.26 humidity 80 43200 < th dose dependent rect. 18 4
60 167.34 humidity 60 43200 > th dose independent sin 13 NA
69 167.41 humidity 60 43200 < th dose independent sin 13 NA
77 167.47 humidity 70 43200 > th dose independent rect. 20 13
79 167.49 humidity 80 43200 < th dose dependent rect. 17 8
102 167.66 humidity 70 43200 < th dose independent rect. 16 18
103 167.66 humidity 70 43200 < th dose dependent rect. 19 14
109 167.73 humidity 70 43200 < th dose independent sin 15 NA
113 167.74 wind 3 43200 < th dose independent rect. 9 2
115 167.74 humidity 70 43200 > th dose independent rect. 16 18
150 167.87 wind 3 43200 < th dose independent rect. 9 5
168 167.95 wind 3 43200 > th dose independent rect. 9 6
220 168.15 humidity 60 43200 < th dose independent sin 10 NA
236 168.21 wind 3 43200 > th dose independent rect. 9 3
244 168.25 wind 3 43200 > th dose independent rect. 9 1
248 168.26 humidity 60 43200 > th dose independent sin 10 NA
265 168.29 wind 3 43200 < th dose dependent rect. 11 1
282 168.35 humidity 70 43200 < th dose independent rect. 12 21
287 168.36 humidity 70 43200 > th dose independent rect. 23 10
310 168.39 wind 7 43200 < th dose dependent rect. 9 15
328 168.43 humidity 60 43200 < th dose dependent sin 10 NA
336 168.45 temperature 15 43200 > th dose independent rect. 11 1
340 168.45 humidity 50 43200 > th dose independent rect. 13 20
370 168.52 temperature 15 43200 < th dose independent rect. 11 1
411 168.58 humidity 80 43200 < th dose dependent sin 14 NA
417 168.59 wind 5 43200 < th dose dependent rect. 9 4
440 168.63 wind 1 43200 > th dose dependent rect. 11 14
466 168.67 humidity 50 43200 < th dose independent rect. 13 20
468 168.67 wind 1 43200 > th dose dependent rect. 9 15
469 168.67 wind 3 43200 > th dose dependent rect. 11 17
478 168.69 wind 3 43200 > th dose dependent rect. 11 19
562 168.84 wind 3 43200 > th dose independent rect. 20 1
564 168.84 wind 9 43200 < th dose dependent sin 20 NA
602 168.90 humidity 70 43200 < th dose independent no NA NA
609 168.90 wind 9 43200 < th dose dependent rect. 8 10
655 168.96 wind 1 43200 > th dose dependent sin 19 NA
693 169.00 wind 3 43200 > th dose dependent sin 17 NA
699 169.01 wind 3 43200 < th dose dependent rect. 20 4
734 169.05 humidity 70 43200 < th dose independent rect. 23 14
735 169.05 wind 5 43200 < th dose independent rect. 12 18
752 169.07 humidity 70 43200 < th dose independent sin 6 NA
773 169.09 wind 1 43200 > th dose dependent rect. 9 9
784 169.10 humidity 70 43200 < th dose independent rect. 22 23
792 169.11 wind 5 43200 > th dose independent rect. 12 18
836 169.15 humidity 70 43200 > th dose independent no NA NA
839 169.15 wind 5 43200 < th dose independent rect. 9 21
906 169.22 wind 3 43200 < th dose independent rect. 20 1
922 169.23 humidity 70 43200 > th dose independent rect. 7 23
939 169.24 wind 5 43200 > th dose independent rect. 9 21
967 169.26 wind 3 43200 > th dose independent rect. 9 14