Os01g0913800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0913800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54 | 0.345 | 9.18 | 1.26 | 1.39 | 1.21 | -0.62 | 0.447 | 0.233 | 20.6 | 21.4 | 312 | -- | -- |
| 54.15 | 0.343 | 9.18 | 1.21 | 1.35 | 1.27 | -0.672 | -- | 0.205 | 20.6 | 21.5 | 338 | -- | -- |
| 55.19 | 0.346 | 9.18 | 1.23 | 1.38 | 1.21 | -- | 0.183 | 0.221 | 20.6 | 21.6 | 313 | -- | -- |
| 55.22 | 0.346 | 9.19 | 1.2 | 1.37 | 1.23 | -- | -- | 0.211 | 20.6 | 21.62 | 325 | -- | -- |
| 120.55 | 0.511 | 9.21 | 0.61 | -- | 2.26 | -- | -2.09 | 0.0223 | -- | 23.7 | 554 | -- | -- |
| 82.45 | 0.426 | 9.15 | 1.46 | 1.73 | -- | -0.36 | -- | 0.419 | 19.8 | -- | -- | -- | -- |
| 82.82 | 0.426 | 9.15 | 1.47 | 1.73 | -- | -- | -- | 0.418 | 19.8 | -- | -- | -- | -- |
| 122.84 | 0.516 | 9.16 | 1.03 | -- | 2.07 | -- | -- | 0.159 | -- | 23.85 | 556 | -- | -- |
| 90.19 | 0.442 | 9.23 | -- | 1.3 | 1.6 | -- | -- | 0.0219 | 21 | 21.15 | 318 | -- | -- |
| 245.4 | 0.732 | 9.11 | 1.44 | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
| 139.49 | 0.552 | 9.19 | -- | 1.72 | -- | -- | -- | 0.255 | 19.8 | -- | -- | -- | -- |
| 149.31 | 0.569 | 9.2 | -- | -- | 2.27 | -- | -- | -0.00432 | -- | 23.43 | 577 | -- | -- |
| 300.45 | 0.809 | 9.14 | -- | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 34 | 51.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 67 | 53.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 69 | 53.18 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 103 | 53.91 | temperature | 20 | 270 | > th | dose dependent | sin | 23 | NA |
| 164 | 54.95 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 198 | 55.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 9 |
| 206 | 55.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 225 | 55.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 232 | 55.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 245 | 55.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 251 | 55.87 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 253 | 55.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 264 | 55.96 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 320 | 56.11 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 341 | 56.14 | temperature | 10 | 1440 | > th | dose dependent | sin | 2 | NA |
| 631 | 56.45 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 707 | 56.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 792 | 56.58 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 810 | 56.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 869 | 56.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 884 | 56.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 916 | 56.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 967 | 56.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 22 |