Os01g0913400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0913400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.69 | 0.419 | 5.88 | 1.15 | 1.67 | 0.614 | -0.0305 | -0.667 | 0.171 | 19.4 | 19.73 | 303 | -- | -- |
| 80.24 | 0.417 | 5.89 | 1.1 | 1.68 | 0.805 | 0.0731 | -- | 0.154 | 19.3 | 19.4 | 288 | -- | -- |
| 79.69 | 0.416 | 5.88 | 1.15 | 1.67 | 0.615 | -- | -0.662 | 0.171 | 19.4 | 19.73 | 303 | -- | -- |
| 80.25 | 0.417 | 5.89 | 1.1 | 1.68 | 0.803 | -- | -- | 0.154 | 19.4 | 19.36 | 291 | -- | -- |
| 220.99 | 0.696 | 5.85 | 1.03 | -- | 0.634 | -- | -0.3 | 0.11 | -- | 19.1 | 80 | -- | -- |
| 94.26 | 0.455 | 5.92 | 0.831 | 1.63 | -- | 0.00304 | -- | 0.0345 | 19.5 | -- | -- | -- | -- |
| 94.26 | 0.455 | 5.92 | 0.831 | 1.63 | -- | -- | -- | 0.0346 | 19.5 | -- | -- | -- | -- |
| 221.05 | 0.695 | 5.86 | 0.997 | -- | 0.671 | -- | -- | 0.105 | -- | 19.36 | 291 | -- | -- |
| 108.49 | 0.488 | 5.93 | -- | 1.61 | 0.349 | -- | -- | -0.0181 | 19.4 | 19.36 | 291 | -- | -- |
| 235.76 | 0.717 | 5.88 | 0.807 | -- | -- | -- | -- | 0.00932 | -- | -- | -- | -- | -- |
| 112.45 | 0.496 | 5.94 | -- | 1.62 | -- | -- | -- | -0.058 | 19.6 | -- | -- | -- | -- |
| 245.66 | 0.732 | 5.89 | -- | -- | 0.457 | -- | -- | -0.0294 | -- | 19.36 | 291 | -- | -- |
| 252.92 | 0.742 | 5.9 | -- | -- | -- | -- | -- | -0.0802 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.92 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 18 |
| 2 | 74.02 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 20 |
| 19 | 77.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 21 | 77.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 17 |
| 28 | 77.56 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 21 |
| 29 | 77.60 | temperature | 20 | 10 | > th | dose dependent | sin | 8 | NA |
| 43 | 78.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 44 | 78.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 48 | 78.07 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 19 |
| 53 | 78.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 54 | 78.14 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 94 | 78.56 | temperature | 25 | 10 | < th | dose dependent | sin | 7 | NA |
| 121 | 78.77 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 152 | 79.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 158 | 79.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 163 | 79.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 236 | 79.32 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 21 |
| 257 | 79.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 262 | 79.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 266 | 79.37 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 288 | 79.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 290 | 79.42 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 311 | 79.45 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 319 | 79.47 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 19 |
| 350 | 79.52 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 400 | 79.58 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 422 | 79.62 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 424 | 79.62 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 528 | 79.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 13 |
| 551 | 79.74 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 552 | 79.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 590 | 79.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 638 | 79.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 650 | 79.83 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 8 |
| 669 | 79.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 741 | 79.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 787 | 79.92 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 811 | 79.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 939 | 80.04 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 959 | 80.05 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |