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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0913300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0457) R2 : 0.141
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.973 (0.115) R2dC : 0.136 R2C : 0.135
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.0959) R2dN8 : 0.00606 R2N8 : 0.00431
σ : 0.86
deviance : 338.06
__
_____
C
peak time of C : 8.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
291.23 0.802 3.46 -0.616 0.96 -0.54 -0.976 21.7 0.09 8.91 80 90 0.977 2.95
303 0.811 3.44 -0.382 0.871 2.29 -1.63 -- 0.124 8.69 74.2 226 0.197 3.46
294.37 0.799 3.45 -0.646 0.969 -0.705 -- 22.1 0.0899 8.77 79.5 87 0.908 3.35
296.24 0.807 3.47 -0.712 0.967 3.94 -- -- 0.0956 8.81 79.5 87 0.908 3.35
347.36 0.868 3.48 -0.642 -- -0.811 -- 22.9 0.0928 -- 79.85 84 1.02 3.46
324.07 0.844 3.47 -0.619 0.965 -- -0.943 -- 0.0807 8.79 -- -- -- --
326.83 0.847 3.47 -0.653 0.976 -- -- -- 0.0787 8.55 -- -- -- --
329.65 0.846 3.63 -0.774 -- 0.8 -- -- -0.131 -- 94.1 635 0.676 2.11
309 0.819 3.45 -- 0.963 4.32 -- -- 0.174 8.85 78.85 86 0.926 3.33
380.24 0.911 3.5 -0.649 -- -- -- -- 0.0878 -- -- -- -- --
338.06 0.86 3.46 -- 0.973 -- -- -- 0.151 8.6 -- -- -- --
342.24 0.862 3.61 -- -- 0.8 -- -- -0.0177 -- 95 650 0.799 1.91
391.35 0.923 3.48 -- -- -- -- -- 0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 291.30 humidity 80 90 < th dose independent rect. 1 3
2 291.47 humidity 80 90 < th dose dependent rect. 1 3
6 292.82 temperature 15 270 > th dose dependent rect. 1 8
9 293.12 humidity 80 270 < th dose independent rect. 24 1
12 293.12 humidity 80 270 < th dose dependent rect. 24 1
14 293.45 temperature 10 720 > th dose dependent rect. 21 11
23 294.79 temperature 30 720 < th dose dependent rect. 18 12
24 295.04 humidity 80 10 < th dose dependent rect. 24 5
37 295.52 temperature 10 720 > th dose dependent rect. 21 6
99 297.90 temperature 30 720 < th dose dependent rect. 23 7
106 298.47 temperature 30 30 < th dose dependent rect. 18 22
109 298.64 temperature 30 720 < th dose dependent rect. 1 5
145 299.31 temperature 10 720 > th dose dependent sin 10 NA
166 299.67 temperature 20 270 < th dose dependent rect. 24 1
206 300.63 temperature 30 720 < th dose dependent sin 11 NA
228 301.10 humidity 50 720 > th dose dependent rect. 18 3
240 301.25 temperature 15 270 > th dose independent rect. 4 14
244 301.32 temperature 20 30 > th dose dependent rect. 4 6
245 301.32 temperature 20 30 > th dose dependent rect. 2 8
278 301.89 temperature 20 270 > th dose independent rect. 2 7
279 301.89 temperature 30 720 < th dose independent rect. 18 10
290 302.00 temperature 30 270 < th dose dependent rect. 21 16
309 302.27 radiation 30 270 < th dose independent rect. 4 14
324 302.47 radiation 20 14400 < th dose independent rect. 18 12
347 302.71 temperature 25 90 < th dose independent rect. 19 21
383 302.98 humidity 60 30 > th dose dependent rect. 17 1
394 303.09 humidity 50 720 > th dose dependent rect. 18 1
397 303.12 atmosphere 1015 270 < th dose dependent rect. 5 13
402 303.18 temperature 30 30 < th dose dependent rect. 17 1
414 303.31 humidity 90 720 < th dose independent rect. 21 2
438 303.46 radiation 1 270 < th dose dependent rect. 18 20
448 303.52 atmosphere 1005 30 > th dose dependent rect. 1 8
458 303.61 humidity 50 720 > th dose dependent rect. 18 10
469 303.68 temperature 30 720 < th dose independent rect. 18 1
477 303.74 temperature 10 270 > th dose dependent rect. 4 14
486 303.80 radiation 20 90 < th dose independent rect. 7 11
516 304.04 atmosphere 1015 720 < th dose dependent rect. 6 3
560 304.41 temperature 10 720 > th dose dependent rect. 21 19
566 304.45 temperature 30 720 < th dose independent rect. 18 3
583 304.53 radiation 30 270 < th dose independent rect. 12 21
603 304.60 temperature 10 30 > th dose dependent rect. 4 14
614 304.68 temperature 30 30 < th dose dependent sin 6 NA
621 304.72 atmosphere 1015 720 < th dose dependent rect. 6 1
622 304.73 temperature 10 720 > th dose dependent rect. 6 1
640 304.80 wind 3 720 > th dose independent rect. 1 8
686 305.06 temperature 25 270 < th dose dependent sin 7 NA
709 305.15 atmosphere 1005 90 > th dose independent rect. 1 8
711 305.15 wind 1 720 < th dose dependent rect. 4 1
762 305.40 radiation 1 30 < th dose dependent rect. 18 23
778 305.46 radiation 20 14400 < th dose independent rect. 5 1
779 305.46 temperature 20 720 > th dose dependent rect. 22 1
783 305.50 temperature 25 270 < th dose independent rect. 21 16
800 305.57 radiation 40 90 < th dose dependent rect. 7 11
811 305.64 temperature 25 720 < th dose dependent rect. 5 1
827 305.70 radiation 1 270 > th dose independent rect. 13 20
830 305.70 radiation 40 270 < th dose dependent rect. 4 14
842 305.78 humidity 70 10 > th dose independent rect. 17 17
852 305.80 atmosphere 995 270 > th dose dependent rect. 9 4
855 305.82 temperature 10 270 > th dose independent rect. 18 10
856 305.82 humidity 50 270 > th dose independent rect. 18 10
857 305.82 radiation 20 270 < th dose independent rect. 18 10
861 305.82 atmosphere 1015 270 < th dose independent rect. 4 14
867 305.84 temperature 10 30 > th dose dependent sin 6 NA
869 305.84 radiation 40 270 < th dose dependent rect. 18 10
873 305.86 atmosphere 995 270 > th dose independent rect. 18 10
877 305.87 wind 9 270 < th dose independent rect. 18 10
910 305.98 wind 9 270 < th dose independent rect. 4 14
934 306.07 atmosphere 1000 90 > th dose dependent rect. 9 7
936 306.09 wind 3 720 < th dose independent rect. 1 4
940 306.10 radiation 30 270 < th dose independent rect. 1 9
947 306.13 temperature 25 90 < th dose independent rect. 21 19
963 306.20 temperature 15 720 > th dose independent rect. 6 1
973 306.24 radiation 1 90 < th dose independent rect. 18 22
1000 306.34 humidity 70 720 > th dose independent rect. 18 3