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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0912900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.43 (0.0301) R2 : 0.854
β1 : 1.62 (0.11) R2dD : 0.0763 R2D : 0.063
β2 : 4.77 (0.111) R2dC : 1.21 R2C : 0.661
β3 : 1.3 (0.096) R2dE : 0.113 R2E : -0.414
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.385 (0.0653) R2dN8 : 0.0165 R2N8 : -0.018
σ : 0.563
deviance : 146.06
__
_____
C
peak time of C : 18.4
E
wheather : temperature
threshold : 25.19
memory length : 217
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22
open length of G : 8.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
137.98 0.552 5.42 1.7 4.74 1.33 2.46 1.63 0.432 18.4 25.02 266 21.9 7.85
147.19 0.565 5.42 1.7 4.75 1.33 2.46 -- 0.434 18.4 25 266 21.9 7.93
149.63 0.57 5.39 1.7 4.67 1.3 -- 1.17 0.494 18.3 25.19 281 21.7 7.78
146.06 0.563 5.43 1.62 4.77 1.3 -- -- 0.385 18.4 25.19 217 22 8.5
240.69 0.723 5.26 1.85 -- -3.39 -- 1.51 0.689 -- 46.62 4741 22.5 10.2
176.69 0.623 5.45 1.68 3.77 -- 1.29 -- 0.242 19 -- -- -- --
180.97 0.63 5.45 1.66 3.78 -- -- -- 0.245 19 -- -- -- --
182.64 0.629 5.25 1.54 -- -3.21 -- -- 0.243 -- 32.4 4609 22.5 12.2
221.67 0.693 5.45 -- 4.77 1.33 -- -- 0.362 18.4 25.2 212 22 8.65
931.25 1.43 5.37 1.58 -- -- -- -- 0.175 -- -- -- -- --
253.37 0.745 5.49 -- 3.76 -- -- -- 0.0607 19 -- -- -- --
255.85 0.745 5.25 -- -- -3.25 -- -- 0.26 -- 32.1 4606 22.5 12.3
997.06 1.47 5.41 -- -- -- -- -- -0.000266 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.20 temperature 25.0 270 < th dose independent rect. 22 8
4 142.26 temperature 30.0 90 < th dose dependent rect. 23 8
8 142.77 temperature 10.0 270 > th dose dependent rect. 18 16
10 143.37 temperature 30.0 270 < th dose dependent rect. 21 9
14 143.71 atmosphere 1010.0 270 < th dose independent rect. 16 9
15 143.84 temperature 10.0 270 > th dose dependent rect. 17 9
19 144.11 wind 7.0 270 < th dose independent rect. 9 22
21 144.64 wind 7.0 270 < th dose independent rect. 10 20
26 144.98 temperature 20.0 270 > th dose independent rect. 17 18
39 146.06 temperature 20.0 270 > th dose independent rect. 17 9
60 147.00 temperature 15.0 1440 > th dose independent rect. 8 5
65 147.17 temperature 20.0 90 > th dose independent rect. 7 20
75 147.67 temperature 20.0 90 > th dose independent rect. 19 8
91 148.31 precipitation 0.1 1440 < th dose independent rect. 10 3
93 148.31 precipitation 0.1 1440 < th dose dependent rect. 10 3
99 148.63 temperature 15.0 270 > th dose independent rect. 6 15
106 148.74 radiation 40.0 270 < th dose independent rect. 6 4
108 148.75 temperature 15.0 270 > th dose independent rect. 8 23
110 148.76 atmosphere 995.0 90 > th dose dependent rect. 23 9
114 148.85 atmosphere 1010.0 90 < th dose independent rect. 19 8
128 149.12 atmosphere 995.0 270 > th dose dependent rect. 21 9
135 149.25 atmosphere 1015.0 270 < th dose independent rect. 6 15
141 149.40 temperature 30.0 270 < th dose independent rect. 6 4
147 149.54 atmosphere 1015.0 270 < th dose dependent rect. 18 16
151 149.64 temperature 10.0 43200 > th dose independent rect. 10 3
152 149.65 temperature 15.0 90 > th dose dependent sin 9 NA
158 149.77 atmosphere 1015.0 10 < th dose dependent rect. 20 16
181 150.12 radiation 40.0 270 < th dose independent rect. 6 16
185 150.16 atmosphere 995.0 10 > th dose dependent rect. 23 9
190 150.24 humidity 60.0 90 > th dose dependent rect. 23 9
195 150.37 humidity 50.0 270 > th dose dependent rect. 21 9
199 150.43 temperature 15.0 270 > th dose independent rect. 6 4
200 150.46 precipitation 0.1 270 < th dose independent rect. 10 20
201 150.46 precipitation 0.1 270 < th dose dependent rect. 10 20
211 150.57 humidity 50.0 270 > th dose independent rect. 6 4
212 150.58 precipitation 0.1 270 < th dose independent rect. 6 4
213 150.58 precipitation 0.1 270 < th dose dependent rect. 6 4
215 150.59 atmosphere 995.0 270 > th dose independent rect. 6 4
216 150.59 atmosphere 1015.0 270 < th dose independent rect. 6 4
217 150.59 temperature 10.0 270 > th dose independent rect. 10 20
219 150.61 wind 9.0 270 < th dose independent rect. 6 4
221 150.62 wind 7.0 90 < th dose independent rect. 13 18
228 150.74 wind 9.0 270 < th dose dependent rect. 10 20
265 151.13 temperature 15.0 10 > th dose dependent rect. 20 8
272 151.18 wind 7.0 270 < th dose independent rect. 21 9
307 151.47 humidity 60.0 90 > th dose independent rect. 7 6
313 151.50 humidity 50.0 14400 > th dose independent rect. 24 9
324 151.54 precipitation 0.1 270 < th dose independent rect. 21 9
326 151.54 precipitation 0.1 270 < th dose dependent rect. 21 9
327 151.55 radiation 1.0 270 > th dose independent rect. 6 4
347 151.66 atmosphere 1015.0 270 < th dose independent rect. 18 16
353 151.73 temperature 20.0 270 > th dose independent rect. 5 21
356 151.74 temperature 10.0 270 > th dose independent rect. 21 9
358 151.74 humidity 50.0 270 > th dose independent rect. 21 9
361 151.74 atmosphere 995.0 270 > th dose independent rect. 21 9
362 151.74 radiation 20.0 270 < th dose independent rect. 21 9
368 151.77 wind 7.0 270 < th dose independent rect. 10 8
382 151.93 wind 9.0 1440 < th dose independent rect. 24 10
390 151.99 radiation 40.0 270 < th dose dependent rect. 21 9
395 152.04 temperature 15.0 270 > th dose independent rect. 4 23
410 152.13 temperature 15.0 10 > th dose dependent rect. 20 16
427 152.23 radiation 40.0 270 < th dose independent rect. 5 22
458 152.37 radiation 20.0 90 < th dose independent rect. 23 9
462 152.40 atmosphere 1010.0 10 < th dose independent rect. 19 9
464 152.41 wind 9.0 90 < th dose dependent rect. 13 18
514 152.60 wind 7.0 14400 > th dose independent sin 7 NA
523 152.63 atmosphere 1015.0 270 < th dose dependent rect. 17 8
525 152.66 wind 5.0 90 < th dose independent rect. 23 8
532 152.72 wind 9.0 90 < th dose dependent rect. 23 8
543 152.80 temperature 30.0 270 < th dose independent rect. 6 14
548 152.84 wind 1.0 270 > th dose independent rect. 6 4
550 152.85 temperature 30.0 90 < th dose independent rect. 7 16
551 152.85 radiation 40.0 270 < th dose dependent rect. 7 2
561 152.91 wind 7.0 270 < th dose independent rect. 2 14
582 153.00 wind 7.0 14400 < th dose independent sin 7 NA
586 153.04 wind 1.0 43200 < th dose dependent rect. 2 1
593 153.09 wind 9.0 43200 > th dose dependent rect. 14 3
599 153.12 precipitation 0.1 270 < th dose independent rect. 6 15
600 153.12 precipitation 0.1 270 < th dose dependent rect. 6 15
607 153.18 atmosphere 995.0 90 > th dose independent rect. 7 16
610 153.18 wind 5.0 14400 > th dose dependent sin 6 NA
615 153.20 temperature 10.0 270 > th dose dependent rect. 10 7
616 153.21 wind 7.0 14400 > th dose dependent sin 8 NA
618 153.22 wind 9.0 270 < th dose dependent rect. 11 6
620 153.24 humidity 50.0 270 > th dose dependent rect. 7 2
624 153.25 radiation 20.0 270 < th dose independent rect. 15 11
637 153.33 humidity 70.0 90 > th dose independent rect. 23 8
640 153.35 humidity 50.0 14400 > th dose independent rect. 4 5
646 153.37 temperature 10.0 90 > th dose independent rect. 23 8
648 153.37 humidity 50.0 90 > th dose independent rect. 23 8
650 153.37 atmosphere 995.0 90 > th dose independent rect. 23 8
657 153.40 wind 9.0 43200 > th dose independent rect. 14 3
661 153.42 wind 9.0 270 < th dose dependent rect. 10 8
676 153.50 humidity 90.0 30 < th dose independent rect. 7 5
678 153.50 precipitation 0.1 90 < th dose independent rect. 23 8
679 153.50 precipitation 0.1 90 < th dose dependent rect. 23 8
682 153.51 wind 9.0 43200 < th dose independent rect. 14 3
701 153.60 atmosphere 1010.0 720 < th dose independent rect. 15 3
723 153.70 temperature 10.0 90 > th dose independent rect. 13 18
725 153.71 temperature 10.0 270 > th dose dependent rect. 10 19
726 153.72 radiation 1.0 270 > th dose independent sin 8 NA
727 153.72 radiation 1.0 270 < th dose independent sin 8 NA
728 153.72 radiation 40.0 270 < th dose dependent rect. 6 4
736 153.74 radiation 40.0 90 < th dose dependent rect. 23 9
767 153.91 wind 9.0 270 < th dose independent rect. 6 15
768 153.91 humidity 60.0 90 > th dose independent rect. 7 16
770 153.93 wind 1.0 10 > th dose independent rect. 7 5
792 154.04 wind 5.0 14400 > th dose dependent rect. 21 18
794 154.05 wind 7.0 4320 > th dose dependent rect. 8 1
797 154.06 radiation 40.0 270 < th dose dependent rect. 15 11
806 154.07 wind 7.0 14400 > th dose independent rect. 20 16
836 154.18 radiation 1.0 270 < th dose dependent sin 8 NA
892 154.37 wind 7.0 14400 < th dose independent rect. 20 16
913 154.41 radiation 30.0 4320 < th dose independent rect. 4 3
917 154.42 wind 7.0 14400 > th dose dependent rect. 20 16
920 154.43 atmosphere 1015.0 90 < th dose dependent rect. 19 8
931 154.47 temperature 20.0 720 > th dose independent rect. 15 4
940 154.49 wind 5.0 14400 > th dose dependent rect. 1 14
953 154.54 wind 9.0 14400 > th dose independent rect. 18 19
965 154.56 temperature 10.0 10 > th dose independent rect. 7 5
967 154.56 atmosphere 995.0 10 > th dose independent rect. 7 5
968 154.56 atmosphere 1015.0 10 < th dose independent rect. 7 5
971 154.56 temperature 10.0 10 > th dose independent rect. 12 19
975 154.58 atmosphere 1015.0 90 < th dose independent rect. 7 20
985 154.62 precipitation 0.1 10 < th dose independent rect. 7 5
988 154.62 atmosphere 1015.0 270 < th dose dependent rect. 7 2
989 154.62 precipitation 0.1 10 < th dose dependent rect. 7 5