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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0910300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.74 (0.0471) R2 : 0.201
β1 : 1.24 (0.17) R2dD : 0.0972 R2D : 0.0715
β2 : 0.676 (0.12) R2dC : 0.058 R2C : 0.0327
β3 : 1.42 (0.206) R2dE : 0.105 R2E : -0.000932
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.363 (0.107) R2dN8 : 0.0315 R2N8 : -0.00163
σ : 0.861
deviance : 342.08
__
_____
C
peak time of C : 7.47
E
wheather : humidity
threshold : 70.26
memory length : 7619
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
339.29 0.865 5.72 1.26 0.728 1.33 -0.739 1.37 -0.223 7.58 69.99 6385 -- --
339.78 0.859 5.74 1.25 0.683 1.43 -0.906 -- -0.365 7.43 70.47 7621 -- --
340.76 0.86 5.72 1.25 0.721 1.33 -- 1.53 -0.217 7.57 69.84 6361 -- --
342.08 0.861 5.74 1.24 0.676 1.42 -- -- -0.363 7.47 70.26 7619 -- --
359.36 0.883 5.77 1.37 -- 1.47 -- 1.52 -0.343 -- 71.99 7195 -- --
375.81 0.909 5.68 1.09 0.567 -- -0.8 -- -0.0619 7.75 -- -- -- --
377.65 0.91 5.67 1.07 0.567 -- -- -- -0.0609 7.73 -- -- -- --
359.27 0.883 5.75 1.22 -- 1.47 -- -- -0.343 -- 71 7195 -- --
379.47 0.907 5.75 -- 0.745 1.32 -- -- -0.411 7.38 70.92 6342 -- --
395.01 0.929 5.69 1.08 -- -- -- -- -0.0528 -- -- -- -- --
407.97 0.945 5.7 -- 0.576 -- -- -- -0.18 7.6 -- -- -- --
398.3 0.93 5.78 -- -- 1.3 -- -- -0.435 -- 71 7160 -- --
425.77 0.963 5.72 -- -- -- -- -- -0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 335.12 wind 9.0 30 < th dose independent rect. 3 23
2 335.24 temperature 25.0 270 > th dose dependent rect. 23 8
5 337.92 wind 3.0 14400 < th dose dependent rect. 24 5
9 338.29 wind 3.0 14400 < th dose independent rect. 24 1
10 338.29 temperature 25.0 90 > th dose dependent rect. 1 1
11 338.52 wind 1.0 14400 > th dose independent rect. 1 7
15 338.65 wind 1.0 14400 > th dose independent rect. 1 9
22 338.99 wind 1.0 14400 < th dose independent rect. 1 9
24 339.11 wind 3.0 14400 > th dose independent rect. 24 1
25 339.12 wind 1.0 14400 > th dose independent rect. 3 5
32 339.36 precipitation 0.1 14400 > th dose independent rect. 15 2
36 339.39 precipitation 0.1 14400 > th dose dependent rect. 15 2
39 339.43 wind 1.0 14400 > th dose dependent rect. 23 5
40 339.44 precipitation 0.1 14400 < th dose independent rect. 15 2
42 339.44 precipitation 0.1 14400 < th dose dependent rect. 15 2
50 339.59 temperature 25.0 90 > th dose independent rect. 1 1
58 339.85 radiation 1.0 43200 < th dose dependent rect. 3 1
78 340.24 humidity 70.0 14400 < th dose dependent rect. 12 1
79 340.24 precipitation 0.1 14400 > th dose dependent rect. 4 2
91 340.34 temperature 25.0 90 > th dose dependent rect. 1 5
93 340.38 wind 1.0 14400 < th dose dependent rect. 2 8
109 340.62 precipitation 0.1 14400 > th dose independent rect. 4 2
115 340.72 atmosphere 1005.0 30 > th dose dependent rect. 2 1
129 340.86 precipitation 0.1 14400 < th dose independent rect. 4 2
132 340.86 precipitation 0.1 14400 < th dose dependent rect. 4 2
133 340.91 precipitation 0.1 14400 > th dose independent rect. 4 13
138 340.94 precipitation 0.1 14400 > th dose dependent rect. 4 13
139 340.95 precipitation 0.1 14400 < th dose independent rect. 4 13
140 340.95 precipitation 0.1 14400 < th dose dependent rect. 4 13
143 340.98 atmosphere 1005.0 30 > th dose independent rect. 2 1
149 341.02 precipitation 0.1 30 < th dose independent rect. 3 23
151 341.02 precipitation 0.1 30 < th dose dependent rect. 3 23
156 341.06 temperature 25.0 720 > th dose dependent rect. 22 5
175 341.22 radiation 1.0 4320 < th dose dependent rect. 3 1
177 341.23 wind 3.0 30 < th dose dependent rect. 2 1
180 341.25 precipitation 0.1 4320 > th dose dependent rect. 2 15
194 341.33 humidity 90.0 14400 > th dose dependent rect. 9 1
202 341.37 wind 3.0 30 < th dose independent rect. 2 1
222 341.48 wind 9.0 1440 < th dose independent rect. 3 1
223 341.48 temperature 10.0 1440 > th dose independent rect. 3 1
226 341.48 temperature 30.0 1440 < th dose independent rect. 3 1
230 341.48 humidity 50.0 1440 > th dose independent rect. 3 1
240 341.48 atmosphere 995.0 1440 > th dose independent rect. 3 1
241 341.48 radiation 1.0 1440 < th dose independent rect. 3 1
261 341.48 temperature 10.0 1440 > th dose independent rect. 4 23
281 341.53 temperature 10.0 30 > th dose independent rect. 2 1
283 341.53 temperature 30.0 30 < th dose independent rect. 2 1
284 341.53 humidity 50.0 30 > th dose independent rect. 2 1
288 341.53 atmosphere 1010.0 30 < th dose independent rect. 2 1
290 341.53 radiation 1.0 30 < th dose independent rect. 2 1
295 341.53 precipitation 0.1 30 < th dose independent rect. 2 1
296 341.53 temperature 10.0 30 > th dose independent rect. 3 23
297 341.53 radiation 1.0 30 < th dose dependent rect. 2 1
302 341.53 precipitation 0.1 30 < th dose dependent rect. 2 1
306 341.56 precipitation 0.1 14400 > th dose dependent rect. 18 1
307 341.57 precipitation 0.1 14400 > th dose independent rect. 13 7
310 341.58 humidity 50.0 30 > th dose dependent rect. 2 1
315 341.62 precipitation 0.1 14400 < th dose independent rect. 13 7
316 341.62 precipitation 0.1 14400 < th dose dependent rect. 13 7
321 341.65 wind 3.0 14400 < th dose independent rect. 23 5
326 341.68 precipitation 0.1 14400 > th dose dependent rect. 7 10
346 341.78 wind 1.0 14400 > th dose dependent rect. 23 10
356 341.83 atmosphere 995.0 30 > th dose independent rect. 3 23
374 341.92 wind 3.0 14400 < th dose independent rect. 22 7
389 342.01 precipitation 0.1 14400 > th dose independent rect. 7 10
393 342.04 temperature 30.0 30 < th dose dependent rect. 2 1
409 342.12 precipitation 0.1 14400 < th dose independent rect. 7 10
411 342.12 humidity 80.0 14400 < th dose dependent rect. 7 7
412 342.12 precipitation 0.1 14400 < th dose dependent rect. 7 10
422 342.17 atmosphere 1015.0 30 < th dose dependent rect. 2 1
436 342.25 precipitation 0.1 14400 > th dose independent rect. 18 1
442 342.27 precipitation 0.1 14400 > th dose independent sin 1 NA
448 342.28 precipitation 0.1 14400 < th dose independent sin 1 NA
449 342.28 precipitation 0.1 14400 < th dose dependent sin 1 NA
453 342.31 wind 1.0 30 > th dose independent rect. 2 1
484 342.42 precipitation 0.1 14400 < th dose independent rect. 18 1
486 342.42 precipitation 0.1 14400 < th dose dependent rect. 18 1
491 342.44 temperature 25.0 270 > th dose independent rect. 22 9
509 342.50 precipitation 0.1 4320 < th dose independent rect. 4 6
511 342.50 precipitation 0.1 4320 < th dose dependent rect. 4 6
518 342.53 precipitation 0.1 14400 > th dose independent rect. 7 13
523 342.54 precipitation 0.1 14400 < th dose independent rect. 7 13
526 342.54 precipitation 0.1 14400 < th dose dependent rect. 7 13
539 342.62 precipitation 0.1 14400 > th dose dependent rect. 4 10
566 342.71 temperature 25.0 720 > th dose dependent rect. 24 2
580 342.76 wind 9.0 720 < th dose independent rect. 23 16
583 342.76 precipitation 0.1 4320 > th dose dependent rect. 4 6
592 342.78 precipitation 0.1 14400 > th dose dependent sin 2 NA
609 342.85 precipitation 0.1 4320 > th dose independent rect. 4 6
647 343.01 precipitation 0.1 4320 < th dose independent rect. 3 10
650 343.01 precipitation 0.1 4320 < th dose dependent rect. 3 10
681 343.12 precipitation 0.1 4320 > th dose dependent rect. 3 8
694 343.19 precipitation 0.1 4320 > th dose independent rect. 3 10
758 343.42 humidity 80.0 1440 < th dose independent rect. 11 1
770 343.44 humidity 50.0 14400 > th dose dependent rect. 11 1
871 343.72 humidity 80.0 14400 < th dose dependent sin 3 NA
907 343.79 wind 1.0 14400 < th dose dependent rect. 6 1
908 343.79 humidity 90.0 14400 < th dose dependent rect. 8 1
945 343.92 humidity 60.0 14400 > th dose independent rect. 11 5
966 343.98 humidity 50.0 14400 > th dose dependent rect. 8 5
999 344.10 wind 5.0 14400 < th dose dependent sin 8 NA