FiT-DB / Search/ Help/ Sample detail

Os01g0909100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.64 (0.0292) R2 : 0.581
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.89 (0.0758) R2dC : 0.572 R2C : 0.562
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.244 (0.0615) R2dN8 : 0.0187 R2N8 : 0.00845
σ : 0.551
deviance : 138.76
__
_____
C
peak time of C : 16.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.49 0.507 6.87 -1.75 1.83 0.621 0.156 -11.1 0.0931 16.8 29.76 3155 -- --
129.51 0.53 6.61 -0.22 1.71 -0.412 -0.974 -- 0.321 16.8 26.69 1355 -- --
116.4 0.502 6.87 -1.8 1.83 0.611 -- -11 0.072 16.8 29.52 3091 -- --
121.37 0.513 6.65 -0.00361 1.87 -0.683 -- -- 0.193 16.9 27.46 3192 -- --
289.6 0.793 6.89 -2.12 -- 0.479 -- -10.8 -0.0737 -- 28.92 2763 -- --
137.67 0.55 6.64 -0.185 1.88 -- 0.273 -- 0.222 16.8 -- -- -- --
137.86 0.55 6.64 -0.184 1.89 -- -- -- 0.223 16.8 -- -- -- --
288.91 0.792 6.58 0.0489 -- -1.07 -- -- 0.387 -- 22.93 1254 -- --
121.28 0.513 6.65 -- 1.86 -0.718 -- -- 0.178 16.9 27.9 3257 -- --
325.9 0.844 6.62 -0.255 -- -- -- -- 0.174 -- -- -- -- --
138.76 0.551 6.64 -- 1.89 -- -- -- 0.244 16.8 -- -- -- --
288.45 0.791 6.6 -- -- -1.01 -- -- 0.351 -- 23.81 1263 -- --
327.62 0.845 6.62 -- -- -- -- -- 0.203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.81 atmosphere 995.0 90 > th dose dependent rect. 8 19
6 105.62 atmosphere 995.0 270 > th dose dependent rect. 6 20
24 108.48 atmosphere 1000.0 270 > th dose independent rect. 20 16
27 108.70 temperature 10.0 270 > th dose dependent rect. 1 6
36 109.00 atmosphere 1000.0 270 > th dose independent rect. 5 22
37 109.23 atmosphere 1015.0 270 < th dose dependent rect. 11 20
38 109.27 temperature 10.0 90 > th dose dependent rect. 3 5
46 109.89 atmosphere 1000.0 90 > th dose independent rect. 8 19
49 110.02 temperature 10.0 270 > th dose dependent rect. 3 2
58 110.28 temperature 10.0 270 > th dose dependent rect. 11 21
64 110.40 atmosphere 1015.0 270 < th dose dependent rect. 11 9
66 110.44 atmosphere 1015.0 90 < th dose dependent rect. 15 17
68 110.48 temperature 10.0 270 > th dose dependent rect. 12 19
83 110.87 precipitation 0.1 270 < th dose independent rect. 3 2
84 110.87 precipitation 0.1 270 < th dose dependent rect. 3 2
98 111.16 humidity 80.0 270 > th dose independent rect. 3 2
103 111.28 atmosphere 1015.0 270 < th dose dependent rect. 3 2
104 111.33 wind 5.0 270 < th dose independent rect. 3 2
105 111.35 atmosphere 1015.0 270 < th dose dependent rect. 1 19
107 111.40 wind 9.0 270 < th dose independent rect. 5 22
112 111.53 atmosphere 1000.0 10 > th dose independent rect. 9 19
118 111.61 wind 5.0 90 < th dose independent rect. 3 5
119 111.61 temperature 10.0 10 > th dose dependent rect. 15 17
122 111.67 wind 9.0 90 < th dose dependent rect. 3 5
125 111.75 precipitation 0.1 90 < th dose independent rect. 3 5
126 111.75 precipitation 0.1 90 < th dose dependent rect. 3 5
128 111.79 temperature 10.0 270 > th dose independent rect. 3 2
130 111.79 temperature 30.0 270 < th dose independent rect. 3 2
131 111.79 humidity 50.0 270 > th dose independent rect. 3 2
134 111.79 atmosphere 995.0 270 > th dose independent rect. 3 2
135 111.79 atmosphere 1010.0 270 < th dose independent rect. 3 2
137 111.79 radiation 20.0 270 < th dose independent rect. 3 2
140 111.79 temperature 10.0 270 > th dose independent rect. 5 22
141 111.79 radiation 1.0 270 < th dose dependent rect. 3 2
142 111.80 radiation 20.0 270 < th dose dependent rect. 3 2
147 111.83 radiation 1.0 270 < th dose independent rect. 3 2
149 111.84 temperature 30.0 270 < th dose independent rect. 6 7
153 111.87 wind 9.0 270 < th dose dependent rect. 3 2
156 111.90 temperature 15.0 10 > th dose dependent rect. 3 6
184 112.20 humidity 50.0 270 > th dose dependent rect. 3 2
188 112.25 temperature 10.0 90 > th dose independent rect. 3 5
190 112.25 temperature 30.0 90 < th dose independent rect. 3 5
191 112.25 humidity 50.0 90 > th dose independent rect. 3 5
193 112.25 atmosphere 995.0 90 > th dose independent rect. 3 5
194 112.25 atmosphere 1015.0 90 < th dose independent rect. 3 5
195 112.25 temperature 10.0 90 > th dose independent rect. 8 19
196 112.26 wind 9.0 90 < th dose independent rect. 8 19
203 112.33 radiation 40.0 90 < th dose independent rect. 3 5
204 112.33 humidity 80.0 270 > th dose independent rect. 1 6
205 112.37 atmosphere 1015.0 90 < th dose dependent rect. 3 20
228 112.58 precipitation 0.1 270 < th dose independent rect. 1 6
231 112.58 precipitation 0.1 270 < th dose dependent rect. 1 6
233 112.61 temperature 10.0 270 > th dose dependent rect. 2 18
236 112.64 atmosphere 1015.0 90 < th dose dependent rect. 3 5
241 112.70 atmosphere 1015.0 270 < th dose dependent rect. 1 6
259 112.86 wind 9.0 270 < th dose dependent rect. 1 6
264 112.91 wind 7.0 270 < th dose independent rect. 1 6
274 112.98 temperature 30.0 270 < th dose independent rect. 20 16
276 112.99 atmosphere 995.0 90 > th dose dependent rect. 8 7
281 113.02 temperature 30.0 90 < th dose independent rect. 8 19
283 113.05 radiation 20.0 270 < th dose independent rect. 1 6
289 113.10 humidity 80.0 270 > th dose independent rect. 2 4
302 113.18 precipitation 0.1 90 < th dose independent rect. 8 19
306 113.18 precipitation 0.1 90 < th dose dependent rect. 8 19
312 113.22 temperature 10.0 270 > th dose independent rect. 1 6
314 113.22 temperature 30.0 270 < th dose independent rect. 1 6
315 113.22 humidity 50.0 270 > th dose independent rect. 1 6
317 113.22 atmosphere 995.0 270 > th dose independent rect. 1 6
318 113.22 atmosphere 1015.0 270 < th dose independent rect. 1 6
329 113.29 atmosphere 995.0 270 > th dose dependent rect. 20 16
337 113.37 wind 9.0 270 < th dose independent rect. 6 20
339 113.41 temperature 10.0 30 > th dose dependent rect. 4 16
372 113.66 radiation 40.0 270 < th dose dependent rect. 1 6
377 113.70 radiation 10.0 270 < th dose independent rect. 2 4
411 113.81 temperature 10.0 270 > th dose independent rect. 6 20
423 113.88 atmosphere 995.0 30 > th dose dependent rect. 20 8
428 113.91 radiation 40.0 270 < th dose dependent rect. 2 4
430 113.92 humidity 50.0 270 > th dose dependent rect. 1 6
476 114.08 humidity 50.0 270 > th dose dependent rect. 2 4
484 114.11 atmosphere 995.0 10 > th dose dependent rect. 9 6
485 114.11 temperature 30.0 270 < th dose dependent rect. 6 20
494 114.15 temperature 30.0 270 < th dose independent rect. 6 20
511 114.24 wind 7.0 270 < th dose independent rect. 17 9
518 114.31 atmosphere 995.0 90 > th dose independent rect. 8 7
540 114.34 precipitation 0.1 10 < th dose independent rect. 3 6
541 114.34 precipitation 0.1 10 < th dose dependent rect. 3 6
554 114.46 precipitation 0.1 270 < th dose independent rect. 13 17
557 114.46 precipitation 0.1 270 < th dose dependent rect. 13 17
575 114.54 wind 9.0 10 < th dose dependent rect. 3 6
577 114.55 atmosphere 1015.0 90 < th dose independent rect. 15 17
579 114.56 precipitation 0.1 90 < th dose independent rect. 15 17
581 114.56 precipitation 0.1 90 < th dose dependent rect. 15 17
613 114.62 precipitation 0.1 270 < th dose independent rect. 5 22
618 114.62 precipitation 0.1 270 < th dose dependent rect. 5 22
625 114.65 atmosphere 1000.0 30 > th dose independent rect. 20 8
650 114.76 precipitation 0.1 270 < th dose independent rect. 2 15
654 114.76 precipitation 0.1 270 < th dose dependent rect. 2 15
660 114.79 precipitation 0.1 90 < th dose independent rect. 8 7
663 114.79 precipitation 0.1 90 < th dose dependent rect. 8 7
664 114.79 atmosphere 995.0 30 > th dose dependent rect. 20 19
680 114.87 atmosphere 995.0 270 > th dose dependent rect. 6 8
691 114.90 atmosphere 1000.0 30 > th dose independent rect. 20 19
707 114.95 temperature 10.0 90 > th dose independent rect. 8 7
708 114.95 atmosphere 1015.0 90 < th dose independent rect. 8 7
709 114.95 temperature 10.0 90 > th dose independent rect. 15 17
720 114.99 wind 7.0 10 < th dose independent rect. 3 6
754 115.12 precipitation 0.1 10 < th dose independent rect. 15 17
760 115.12 precipitation 0.1 10 < th dose dependent rect. 15 17
767 115.15 temperature 10.0 720 > th dose dependent rect. 18 13
770 115.16 wind 1.0 90 > th dose independent rect. 8 19
788 115.22 wind 1.0 90 > th dose independent rect. 8 7
790 115.22 radiation 10.0 270 < th dose independent rect. 17 9
791 115.22 temperature 15.0 270 > th dose independent rect. 2 15
805 115.23 temperature 10.0 10 > th dose independent rect. 3 6
807 115.23 temperature 30.0 10 < th dose independent rect. 3 6
808 115.23 humidity 50.0 10 > th dose independent rect. 3 6
810 115.23 atmosphere 995.0 10 > th dose independent rect. 3 6
811 115.23 atmosphere 1015.0 10 < th dose independent rect. 3 6
812 115.23 temperature 10.0 10 > th dose independent rect. 9 18
823 115.25 temperature 10.0 720 > th dose dependent rect. 19 20
837 115.27 wind 9.0 10 < th dose independent rect. 9 18
872 115.30 radiation 40.0 90 < th dose independent rect. 15 17
876 115.31 humidity 50.0 90 > th dose independent rect. 8 19
878 115.32 atmosphere 1015.0 270 < th dose independent rect. 11 10
892 115.35 precipitation 0.1 270 < th dose independent rect. 6 20
893 115.35 precipitation 0.1 270 < th dose dependent rect. 6 20
910 115.37 atmosphere 1015.0 10 < th dose independent rect. 15 18
918 115.40 wind 1.0 270 > th dose independent rect. 3 2
945 115.51 temperature 30.0 1440 < th dose independent rect. 10 2
946 115.51 temperature 10.0 270 > th dose independent rect. 6 7
947 115.51 atmosphere 995.0 270 > th dose independent rect. 6 7
948 115.51 atmosphere 1015.0 270 < th dose independent rect. 6 7
949 115.51 temperature 10.0 270 > th dose independent rect. 13 17
951 115.51 radiation 40.0 90 < th dose independent rect. 13 19
970 115.54 wind 9.0 90 < th dose independent rect. 8 7
983 115.57 precipitation 0.1 270 < th dose independent rect. 6 7
986 115.57 precipitation 0.1 270 < th dose dependent rect. 6 7
989 115.59 temperature 30.0 1440 > th dose independent rect. 10 1