Os01g0908400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0908400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21 | 0.215 | 12.5 | -0.331 | 0.0413 | -0.393 | 0.129 | -0.00454 | -0.125 | 2.76 | 1010 | 11848 | -- | -- |
| 21 | 0.213 | 12.5 | -0.333 | 0.0414 | -0.393 | 0.13 | -- | -0.126 | 2.76 | 1010 | 11849 | -- | -- |
| 21.05 | 0.214 | 12.5 | -0.335 | 0.0384 | -0.393 | -- | -0.00522 | -0.125 | 2.78 | 1010 | 11614 | -- | -- |
| 21.05 | 0.214 | 12.5 | -0.338 | 0.0388 | -0.394 | -- | -- | -0.125 | 2.74 | 1010 | 11614 | -- | -- |
| 21.14 | 0.214 | 12.5 | -0.334 | -- | -0.395 | -- | -0.00825 | -0.122 | -- | 1010 | 11479 | -- | -- |
| 26.56 | 0.242 | 12.5 | -0.213 | 0.0439 | -- | 0.158 | -- | -0.00253 | 2.93 | -- | -- | -- | -- |
| 26.64 | 0.242 | 12.5 | -0.217 | 0.0453 | -- | -- | -- | -0.00352 | 3.36 | -- | -- | -- | -- |
| 21.14 | 0.214 | 12.5 | -0.337 | -- | -0.395 | -- | -- | -0.122 | -- | 1010 | 11478 | -- | -- |
| 23.84 | 0.227 | 12.5 | -- | 0.0382 | -0.329 | -- | -- | -0.0757 | 3.16 | 1010 | 12036 | -- | -- |
| 26.76 | 0.242 | 12.5 | -0.215 | -- | -- | -- | -- | -0.00232 | -- | -- | -- | -- | -- |
| 27.88 | 0.247 | 12.5 | -- | 0.041 | -- | -- | -- | 0.0206 | 3.38 | -- | -- | -- | -- |
| 23.92 | 0.228 | 12.5 | -- | -- | -0.325 | -- | -- | -0.0706 | -- | 1010 | 12014 | -- | -- |
| 27.98 | 0.247 | 12.5 | -- | -- | -- | -- | -- | 0.0215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.28 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 2 | 21.35 | wind | 9.0 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 4 | 21.36 | wind | 9.0 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 6 | 21.38 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 11 | 21.41 | wind | 9.0 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 15 | 21.44 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 14 | 18 |
| 18 | 21.44 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 14 | 22 |
| 23 | 21.46 | wind | 9.0 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 34 | 21.54 | wind | 9.0 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 38 | 21.56 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 39 | 21.56 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 40 | 21.56 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 48 | 21.58 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 51 | 21.59 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 72 | 21.61 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 84 | 21.62 | wind | 9.0 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 95 | 21.63 | wind | 9.0 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 104 | 21.63 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 110 | 21.64 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 125 | 21.64 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 137 | 21.65 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 182 | 21.66 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 203 | 21.67 | wind | 9.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 230 | 21.67 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 13 | 19 |
| 236 | 21.67 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 248 | 21.67 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 249 | 21.68 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 252 | 21.68 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 260 | 21.68 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 311 | 21.69 | atmosphere | 1010.0 | 14400 | < th | dose independent | no | NA | NA |
| 382 | 21.70 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 448 | 21.71 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 463 | 21.71 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 493 | 21.71 | wind | 9.0 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 513 | 21.71 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 14 | 7 |
| 521 | 21.71 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 10 | 14 |
| 599 | 21.72 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 21 | 20 |
| 612 | 21.72 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 622 | 21.72 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 623 | 21.72 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 624 | 21.72 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 625 | 21.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 626 | 21.72 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 677 | 21.72 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 3 | 21 |
| 683 | 21.73 | atmosphere | 1010.0 | 14400 | > th | dose independent | no | NA | NA |
| 712 | 21.73 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 778 | 21.73 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 784 | 21.73 | atmosphere | 1000.0 | 14400 | > th | dose dependent | sin | 20 | NA |
| 847 | 21.73 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 3 | 18 |
| 855 | 21.73 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 19 | 18 |
| 878 | 21.73 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 14 | 20 |
| 926 | 21.74 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 9 | 1 |