Os01g0906200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0906200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.23 | 0.206 | 11.6 | 0.593 | 0.418 | 0.383 | 0.168 | -0.515 | 0.379 | 22.2 | 90.87 | 383 | -- | -- |
| 19.63 | 0.206 | 11.6 | 0.591 | 0.424 | 0.389 | 0.264 | -- | 0.378 | 22.2 | 91.3 | 396 | -- | -- |
| 19.3 | 0.205 | 11.6 | 0.593 | 0.412 | 0.396 | -- | -0.633 | 0.379 | 22.4 | 91.67 | 382 | -- | -- |
| 19.88 | 0.208 | 11.6 | 0.559 | 0.423 | 0.383 | -- | -- | 0.376 | 22.2 | 91.21 | 400 | -- | -- |
| 26.74 | 0.242 | 11.6 | 0.563 | -- | 0.29 | -- | -0.113 | 0.377 | -- | 87.02 | 30 | -- | -- |
| 21.69 | 0.218 | 11.6 | 0.601 | 0.376 | -- | 0.19 | -- | 0.319 | 23.4 | -- | -- | -- | -- |
| 21.84 | 0.219 | 11.6 | 0.593 | 0.375 | -- | -- | -- | 0.319 | 23.4 | -- | -- | -- | -- |
| 25.64 | 0.237 | 11.6 | 0.585 | -- | 0.281 | -- | -- | 0.352 | -- | 74.78 | 7 | -- | -- |
| 27.87 | 0.246 | 11.6 | -- | 0.442 | 0.445 | -- | -- | 0.324 | 22 | 90 | 395 | -- | -- |
| 30.64 | 0.259 | 11.6 | 0.603 | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
| 31.1 | 0.261 | 11.7 | -- | 0.381 | -- | -- | -- | 0.253 | 23.5 | -- | -- | -- | -- |
| 34.57 | 0.275 | 11.6 | -- | -- | 0.303 | -- | -- | 0.295 | -- | 77.7 | 4 | -- | -- |
| 40.22 | 0.296 | 11.6 | -- | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.09 | humidity | 90 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 3 | 19.19 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 5 | 19.22 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 7 |
| 8 | 19.26 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 29 | 19.39 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 37 | 19.43 | humidity | 90 | 720 | > th | dose dependent | sin | 16 | NA |
| 51 | 19.47 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 5 |
| 84 | 19.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 89 | 19.57 | humidity | 90 | 720 | > th | dose independent | rect. | 7 | 19 |
| 111 | 19.62 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 1 |
| 112 | 19.62 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 1 |
| 116 | 19.62 | humidity | 90 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 145 | 19.65 | humidity | 90 | 270 | > th | dose dependent | no | NA | NA |
| 155 | 19.66 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 175 | 19.68 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 193 | 19.69 | humidity | 90 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 249 | 19.74 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 9 |
| 289 | 19.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 310 | 19.78 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 316 | 19.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 342 | 19.80 | humidity | 90 | 720 | > th | dose independent | sin | 14 | NA |
| 398 | 19.83 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 400 | 19.83 | humidity | 90 | 720 | > th | dose independent | rect. | 18 | 18 |
| 506 | 19.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 511 | 19.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 624 | 19.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 664 | 19.91 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 665 | 19.91 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 668 | 19.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 686 | 19.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 818 | 19.94 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 819 | 19.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 876 | 19.96 | humidity | 90 | 720 | > th | dose independent | no | NA | NA |
| 956 | 19.97 | humidity | 90 | 720 | < th | dose independent | rect. | 6 | 20 |
| 963 | 19.97 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 982 | 19.98 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |