Os01g0906000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0906000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.31 | 0.549 | 7.35 | -0.274 | 1.81 | -2.32 | 0.0909 | 5.55 | 0.0828 | 4.34 | 26.7 | 5504 | -- | -- |
| 143.54 | 0.558 | 7.42 | -1.15 | 1.76 | -2.23 | 0.276 | -- | 0.286 | 4.55 | 22.77 | 10438 | -- | -- |
| 136.33 | 0.544 | 7.35 | -0.275 | 1.81 | -2.32 | -- | 5.56 | 0.0826 | 4.34 | 26.7 | 5503 | -- | -- |
| 143.1 | 0.557 | 7.42 | -1.21 | 1.78 | -2.17 | -- | -- | 0.287 | 4.52 | 22.7 | 10447 | -- | -- |
| 277.95 | 0.776 | 7.39 | -0.223 | -- | -2.35 | -- | 5.86 | 0.00762 | -- | 27.1 | 4853 | -- | -- |
| 266.95 | 0.766 | 7.64 | -2.62 | 1.73 | -- | -0.0559 | -- | -0.679 | 4.6 | -- | -- | -- | -- |
| 266.95 | 0.765 | 7.64 | -2.61 | 1.73 | -- | -- | -- | -0.679 | 4.6 | -- | -- | -- | -- |
| 305.94 | 0.818 | 7.61 | -2.27 | -- | -1.16 | -- | -- | -0.446 | -- | 27.1 | 4853 | -- | -- |
| 142.42 | 0.556 | 7.39 | -- | 1.76 | -2.7 | -- | -- | 0.402 | 4.49 | 21.37 | 21901 | -- | -- |
| 426.02 | 0.964 | 7.65 | -2.55 | -- | -- | -- | -- | -0.634 | -- | -- | -- | -- | -- |
| 447.18 | 0.989 | 7.57 | -- | 1.68 | -- | -- | -- | -0.388 | 4.64 | -- | -- | -- | -- |
| 306.98 | 0.816 | 7.41 | -- | -- | -2.62 | -- | -- | 0.428 | -- | 21.47 | 21966 | -- | -- |
| 597.35 | 1.14 | 7.59 | -- | -- | -- | -- | -- | -0.351 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.19 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 6 | 130.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 15 | 131.34 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 18 | 131.52 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 18 |
| 25 | 131.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 34 | 131.98 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 35 | 132.03 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 47 | 132.47 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 58 | 132.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 63 | 132.99 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 71 | 133.12 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 85 | 133.37 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 88 | 133.40 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 13 |
| 97 | 133.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 11 |
| 102 | 133.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 127 | 133.84 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 129 | 133.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 130 | 133.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 152 | 133.97 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 153 | 133.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 203 | 134.41 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 220 | 134.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 21 |
| 225 | 134.58 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 242 | 134.68 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 22 |
| 278 | 134.85 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 287 | 134.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 300 | 134.95 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 301 | 134.95 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 304 | 134.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 333 | 135.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 381 | 135.34 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 421 | 135.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 456 | 135.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 460 | 135.87 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 476 | 135.97 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 478 | 135.97 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 479 | 135.97 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 483 | 136.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 516 | 136.26 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 518 | 136.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 526 | 136.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 529 | 136.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 541 | 136.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 21 |
| 564 | 136.46 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 595 | 136.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 625 | 136.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 676 | 137.15 | humidity | 90 | 43200 | > th | dose dependent | sin | 5 | NA |
| 734 | 137.58 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 737 | 137.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 740 | 137.63 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 767 | 137.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 6 |
| 808 | 138.05 | humidity | 90 | 43200 | > th | dose independent | sin | 6 | NA |
| 820 | 138.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 832 | 138.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 846 | 138.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 940 | 138.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 982 | 139.20 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 992 | 139.29 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 994 | 139.30 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 13 |