Os01g0904200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0904200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.08 | 0.342 | 11.4 | -1.6 | 2.73 | -0.146 | 1.5 | 6.1 | -0.447 | 6.75 | 32.12 | 1059 | -- | -- |
| 55.17 | 0.346 | 11.5 | -2.44 | 2.78 | 0.539 | 1.25 | -- | -0.456 | 6.76 | 28.52 | 1134 | -- | -- |
| 58.77 | 0.357 | 11.4 | -1.57 | 2.72 | -0.136 | -- | 6.03 | -0.448 | 6.77 | 32.02 | 1080 | -- | -- |
| 60.45 | 0.362 | 11.5 | -2.49 | 2.72 | 0.535 | -- | -- | -0.484 | 6.78 | 28.5 | 1160 | -- | -- |
| 442.5 | 0.98 | 11.5 | -1.2 | -- | -0.254 | -- | 7.38 | -0.389 | -- | 31.28 | 1343 | -- | -- |
| 67.47 | 0.385 | 11.6 | -2.37 | 2.73 | -- | 1.54 | -- | -0.539 | 6.62 | -- | -- | -- | -- |
| 73.41 | 0.401 | 11.6 | -2.35 | 2.74 | -- | -- | -- | -0.543 | 6.65 | -- | -- | -- | -- |
| 440.16 | 0.981 | 11.6 | -2.13 | -- | -0.98 | -- | -- | -0.37 | -- | 23.7 | 2795 | -- | -- |
| 215.7 | 0.684 | 11.5 | -- | 2.72 | 0.226 | -- | -- | -0.249 | 6.77 | 33.77 | 1009 | -- | -- |
| 464.36 | 1.01 | 11.6 | -2.28 | -- | -- | -- | -- | -0.488 | -- | -- | -- | -- | -- |
| 218.52 | 0.691 | 11.5 | -- | 2.71 | -- | -- | -- | -0.282 | 6.7 | -- | -- | -- | -- |
| 517.44 | 1.06 | 11.5 | -- | -- | -1.48 | -- | -- | 0.207 | -- | 7.052 | 47520 | -- | -- |
| 601.7 | 1.14 | 11.6 | -- | -- | -- | -- | -- | -0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 16 |
| 2 | 54.94 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 16 | 54.97 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 18 | 55.02 | humidity | 70.0 | 720 | < th | dose independent | rect. | 16 | 16 |
| 19 | 55.03 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 22 | 55.06 | humidity | 70.0 | 720 | < th | dose independent | rect. | 16 | 4 |
| 39 | 55.15 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 62 | 55.42 | wind | 3.0 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 66 | 55.59 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 68 | 55.60 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 10 |
| 83 | 55.62 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 107 | 55.71 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 112 | 55.73 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 138 | 55.77 | wind | 7.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 177 | 55.83 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 180 | 55.85 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 184 | 55.86 | wind | 5.0 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 188 | 55.87 | wind | 5.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 219 | 55.93 | wind | 5.0 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 228 | 55.95 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 230 | 55.95 | wind | 3.0 | 43200 | > th | dose dependent | sin | 2 | NA |
| 240 | 56.00 | wind | 5.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 242 | 56.00 | wind | 3.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 250 | 56.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 18 |
| 283 | 56.03 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 24 | 18 |
| 287 | 56.04 | wind | 5.0 | 43200 | > th | dose independent | rect. | 24 | 19 |
| 289 | 56.04 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 294 | 56.05 | humidity | 70.0 | 720 | < th | dose independent | sin | 12 | NA |
| 296 | 56.05 | wind | 5.0 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 307 | 56.06 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 18 |
| 311 | 56.07 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 350 | 56.11 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 379 | 56.13 | temperature | 30.0 | 720 | < th | dose independent | sin | 11 | NA |
| 381 | 56.13 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 434 | 56.17 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 5 |
| 474 | 56.22 | wind | 3.0 | 10 | < th | dose dependent | rect. | 2 | 5 |
| 478 | 56.23 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 540 | 56.28 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 558 | 56.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 6 |
| 564 | 56.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 600 | 56.33 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 623 | 56.35 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 21 |
| 688 | 56.38 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 703 | 56.39 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 6 |
| 783 | 56.43 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 904 | 56.45 | wind | 5.0 | 43200 | < th | dose independent | no | NA | NA |
| 917 | 56.45 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 953 | 56.47 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 965 | 56.47 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 984 | 56.48 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 2 | 14 |
| 999 | 56.49 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 17 | 23 |