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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0902100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ABC transporter, transmembrane region, type 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.83 (0.0575) R2 : 0.557
β1 : -4.02 (0.211) R2dD : 0.367 R2D : 0.36
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.79 (0.215) R2dE : 0.165 R2E : 0.11
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.678 (0.123) R2dN8 : 0.0397 R2N8 : 0.0633
σ : 1.08
deviance : 534.03
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 3.3
memory length : 6
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.55
open length of G : 5.32

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
519.19 1.07 4.85 -4.22 0.655 2.46 0.529 -3.58 0.657 4.67 2.866 23 3.15 5.24
522.98 1.07 4.81 -4.03 0.682 2.51 -0.0252 -- 0.675 4.92 2.658 13 3.6 4.41
519.53 1.06 4.84 -4.2 0.683 2.47 -- -3.13 0.665 4.96 2.764 23 3.18 5.41
521.66 1.06 4.81 -3.97 0.694 2.51 -- -- 0.728 5.22 2.671 6 3.55 5.38
532.36 1.07 4.85 -4.19 -- 2.81 -- -2.79 0.664 -- 3.244 23 3.02 5.6
594.86 1.14 4.83 -3.89 1.61 -- 0.276 -- 0.573 5.21 -- -- -- --
595.04 1.14 4.83 -3.89 1.61 -- -- -- 0.572 5.23 -- -- -- --
534.03 1.08 4.83 -4.02 -- 2.79 -- -- 0.678 -- 3.3 6 3.55 5.32
941.99 1.43 4.72 -- 0.797 1.97 -- -- 1.1 5.28 2.774 3 3.71 5.51
730.72 1.26 4.85 -3.83 -- -- -- -- 0.613 -- -- -- -- --
992.89 1.47 4.73 -- 1.54 -- -- -- 1 5.33 -- -- -- --
956.13 1.44 4.7 -- -- 2.31 -- -- 1.2 -- 3.715 3 3.42 5.6
1117.47 1.56 4.75 -- -- -- -- -- 1.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 521.87 wind 3.0 30 < th dose dependent rect. 3 5
8 526.52 humidity 50.0 90 > th dose dependent rect. 3 20
14 530.76 humidity 50.0 90 > th dose dependent rect. 3 12
25 532.18 humidity 50.0 90 > th dose dependent rect. 3 10
27 532.34 atmosphere 1015.0 90 < th dose independent rect. 3 20
33 533.46 humidity 80.0 90 > th dose dependent rect. 3 11
34 533.48 precipitation 0.1 90 < th dose independent rect. 3 20
35 533.48 precipitation 0.1 90 < th dose dependent rect. 3 20
38 533.79 humidity 80.0 90 > th dose dependent rect. 3 8
43 534.32 temperature 10.0 720 > th dose dependent rect. 18 3
44 534.38 humidity 50.0 270 > th dose independent rect. 1 20
48 534.48 humidity 50.0 90 > th dose dependent rect. 3 18
50 534.53 wind 3.0 90 < th dose dependent rect. 3 9
53 534.61 temperature 10.0 90 > th dose independent rect. 23 4
54 534.61 temperature 30.0 90 < th dose independent rect. 23 4
55 534.61 humidity 50.0 90 > th dose independent rect. 23 4
58 534.61 atmosphere 995.0 90 > th dose independent rect. 23 4
59 534.61 radiation 1.0 90 < th dose independent rect. 23 4
64 534.61 temperature 10.0 90 > th dose independent rect. 3 20
65 534.61 radiation 1.0 90 < th dose dependent rect. 23 4
71 534.64 humidity 80.0 90 > th dose dependent rect. 3 4
72 534.65 wind 9.0 90 < th dose independent rect. 23 4
73 534.67 precipitation 0.1 90 < th dose independent rect. 23 4
74 534.67 precipitation 0.1 90 < th dose dependent rect. 23 4
81 535.04 humidity 50.0 270 > th dose independent rect. 16 13
83 535.07 humidity 50.0 90 > th dose independent rect. 3 20
86 535.31 humidity 50.0 90 > th dose dependent rect. 23 4
87 535.35 radiation 1.0 90 < th dose independent rect. 3 20
89 535.65 humidity 80.0 90 > th dose independent rect. 3 20
90 535.75 temperature 30.0 30 < th dose independent rect. 3 20
102 536.31 wind 9.0 90 < th dose independent rect. 3 20
114 536.91 wind 1.0 270 > th dose independent rect. 4 22
122 537.13 radiation 1.0 90 < th dose dependent rect. 3 20
124 537.30 temperature 20.0 90 > th dose independent rect. 3 20
128 537.39 wind 1.0 270 < th dose independent rect. 4 2
137 537.62 wind 3.0 10 < th dose dependent rect. 3 20
140 537.64 radiation 1.0 270 < th dose dependent rect. 1 20
143 537.70 humidity 70.0 10 > th dose dependent rect. 3 5
149 537.94 wind 1.0 270 > th dose independent rect. 21 13
150 538.00 humidity 80.0 270 > th dose independent rect. 3 1
155 538.17 atmosphere 995.0 90 > th dose dependent rect. 23 4
158 538.22 wind 1.0 90 < th dose independent rect. 3 4
161 538.25 humidity 50.0 270 > th dose dependent rect. 1 12
172 538.49 atmosphere 995.0 90 > th dose independent rect. 3 20
182 538.82 humidity 80.0 270 > th dose independent rect. 2 3
194 539.11 humidity 50.0 270 > th dose independent rect. 24 22
215 539.72 radiation 1.0 270 < th dose independent rect. 1 20
230 539.98 temperature 15.0 90 > th dose dependent rect. 3 3
237 540.10 wind 9.0 90 < th dose dependent rect. 23 4
255 540.46 temperature 20.0 90 > th dose independent rect. 3 3
258 540.51 temperature 20.0 10 > th dose independent rect. 3 5
292 541.14 radiation 10.0 720 < th dose independent rect. 17 6
293 541.14 radiation 20.0 270 < th dose independent rect. 16 13
296 541.21 wind 1.0 90 > th dose independent rect. 23 4
314 541.60 atmosphere 1015.0 90 < th dose dependent rect. 3 4
325 541.75 humidity 80.0 10 > th dose independent rect. 3 5
326 541.78 temperature 25.0 270 < th dose independent rect. 2 3
343 542.08 wind 9.0 90 < th dose dependent rect. 3 20
348 542.19 temperature 30.0 90 < th dose independent rect. 3 18
355 542.34 temperature 10.0 270 > th dose dependent rect. 3 1
365 542.43 radiation 40.0 270 < th dose dependent rect. 16 13
369 542.47 wind 9.0 270 < th dose independent rect. 23 1
370 542.47 temperature 10.0 270 > th dose independent rect. 23 1
371 542.47 temperature 30.0 270 < th dose independent rect. 23 1
372 542.47 humidity 50.0 270 > th dose independent rect. 23 1
375 542.47 atmosphere 995.0 270 > th dose independent rect. 23 1
376 542.47 radiation 1.0 270 < th dose independent rect. 23 1
381 542.47 temperature 10.0 270 > th dose independent rect. 24 23
382 542.47 radiation 1.0 270 < th dose dependent rect. 23 1
395 542.56 humidity 90.0 90 > th dose independent rect. 3 8
398 542.68 temperature 30.0 720 > th dose dependent rect. 18 1
413 542.71 humidity 80.0 90 > th dose independent rect. 3 11
414 542.71 wind 9.0 90 < th dose dependent rect. 3 10
417 542.75 precipitation 0.1 270 < th dose independent rect. 23 1
418 542.75 precipitation 0.1 270 < th dose dependent rect. 23 1
426 542.85 wind 9.0 90 < th dose dependent rect. 3 12
450 542.92 temperature 20.0 270 > th dose independent rect. 3 1
475 543.26 radiation 10.0 720 < th dose independent rect. 17 4
476 543.27 temperature 20.0 10 > th dose dependent rect. 3 3
483 543.32 humidity 50.0 270 > th dose dependent rect. 23 1
494 543.50 wind 1.0 270 > th dose independent rect. 5 11
496 543.51 wind 1.0 90 > th dose independent rect. 23 12
546 543.82 radiation 30.0 90 < th dose dependent rect. 3 5
549 543.85 temperature 10.0 90 > th dose dependent rect. 23 4
599 544.19 temperature 10.0 30 > th dose dependent rect. 3 5
600 544.20 atmosphere 1015.0 270 < th dose independent rect. 10 11
601 544.21 temperature 25.0 270 < th dose independent rect. 3 1
612 544.33 atmosphere 1015.0 270 < th dose dependent rect. 3 1
615 544.34 precipitation 0.1 270 < th dose independent rect. 24 23
616 544.34 precipitation 0.1 270 < th dose dependent rect. 24 23
626 544.45 temperature 30.0 270 < th dose independent rect. 16 14
635 544.53 atmosphere 1010.0 90 < th dose independent rect. 3 4
651 544.65 atmosphere 1015.0 90 < th dose independent rect. 23 4
660 544.74 precipitation 0.1 90 < th dose independent rect. 3 12
662 544.74 precipitation 0.1 90 < th dose dependent rect. 3 12
663 544.75 precipitation 0.1 270 < th dose independent rect. 3 1
664 544.75 precipitation 0.1 270 < th dose dependent rect. 3 1
674 544.84 precipitation 0.1 10 < th dose independent rect. 3 5
675 544.84 precipitation 0.1 10 < th dose dependent rect. 3 5
682 544.88 atmosphere 995.0 270 > th dose dependent rect. 23 1
683 544.89 precipitation 0.1 90 < th dose independent rect. 3 4
685 544.89 precipitation 0.1 90 < th dose dependent rect. 3 4
694 544.99 wind 3.0 10 < th dose dependent rect. 3 17
732 545.35 wind 9.0 270 < th dose independent rect. 21 4
733 545.35 humidity 90.0 90 < th dose independent rect. 24 18
738 545.39 temperature 10.0 270 > th dose independent rect. 21 4
739 545.39 temperature 30.0 270 < th dose independent rect. 21 4
740 545.39 humidity 50.0 270 > th dose independent rect. 21 4
743 545.39 atmosphere 995.0 270 > th dose independent rect. 21 4
744 545.39 radiation 1.0 270 < th dose independent rect. 21 4
750 545.39 radiation 1.0 270 < th dose dependent rect. 21 4
768 545.56 radiation 40.0 90 < th dose independent rect. 15 12
771 545.60 humidity 90.0 270 > th dose independent rect. 1 8
783 545.67 temperature 10.0 90 > th dose independent rect. 3 12
784 545.67 temperature 10.0 90 > th dose independent rect. 15 12
785 545.67 atmosphere 1015.0 90 < th dose independent rect. 3 12
788 545.69 wind 7.0 270 < th dose independent rect. 3 1
798 545.74 humidity 90.0 90 > th dose independent rect. 3 14
801 545.75 temperature 10.0 90 > th dose independent rect. 3 4
804 545.75 humidity 50.0 90 > th dose independent rect. 3 4
806 545.75 atmosphere 995.0 90 > th dose independent rect. 3 4
808 545.75 radiation 40.0 90 < th dose independent rect. 3 4
809 545.75 temperature 10.0 90 > th dose independent rect. 7 20
816 545.80 wind 9.0 30 < th dose independent rect. 8 19
831 545.93 precipitation 0.1 270 < th dose independent rect. 17 13
833 545.93 precipitation 0.1 270 < th dose dependent rect. 17 13
841 545.98 precipitation 0.1 270 < th dose independent rect. 21 4
842 545.98 precipitation 0.1 270 < th dose dependent rect. 21 4
851 546.02 wind 9.0 90 < th dose independent rect. 15 12
858 546.05 temperature 10.0 270 > th dose independent rect. 1 12
859 546.05 temperature 10.0 270 > th dose independent rect. 13 12
860 546.05 atmosphere 995.0 270 > th dose independent rect. 1 12
861 546.05 atmosphere 1015.0 270 < th dose independent rect. 1 12
868 546.06 temperature 10.0 270 > th dose independent rect. 3 1
871 546.06 humidity 50.0 270 > th dose independent rect. 3 1
874 546.06 atmosphere 995.0 270 > th dose independent rect. 3 1
875 546.06 atmosphere 1010.0 270 < th dose independent rect. 3 1
877 546.06 radiation 1.0 270 < th dose independent rect. 3 1
882 546.06 temperature 10.0 270 > th dose independent rect. 4 23
883 546.06 radiation 1.0 270 < th dose dependent rect. 3 1
896 546.14 precipitation 0.1 270 < th dose independent rect. 1 12
897 546.14 precipitation 0.1 270 < th dose dependent rect. 1 12
901 546.19 wind 7.0 10 < th dose independent rect. 3 5
910 546.22 radiation 10.0 90 < th dose independent rect. 3 3
935 546.36 temperature 10.0 10 > th dose independent rect. 3 5
937 546.36 temperature 30.0 10 < th dose independent rect. 3 5
938 546.36 humidity 50.0 10 > th dose independent rect. 3 5
940 546.36 atmosphere 995.0 10 > th dose independent rect. 3 5
941 546.36 atmosphere 1015.0 10 < th dose independent rect. 3 5
942 546.36 temperature 10.0 10 > th dose independent rect. 8 19
944 546.37 wind 9.0 270 < th dose independent rect. 24 23
958 546.45 wind 9.0 270 < th dose dependent rect. 23 1