Os01g0901800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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Os01g0901800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.93 | 0.443 | 9.03 | -1.14 | 1.59 | -1.35 | 1.33 | 3.5 | -0.072 | 4.36 | 26.06 | 4706 | -- | -- |
| 89.95 | 0.442 | 9.08 | -1.35 | 1.63 | -1.47 | 1.26 | -- | 0.024 | 4.39 | 22.9 | 21963 | -- | -- |
| 93.36 | 0.45 | 9.03 | -1.11 | 1.61 | -1.4 | -- | 3.79 | -0.0791 | 4.5 | 26.36 | 4644 | -- | -- |
| 91.88 | 0.446 | 9.06 | -0.946 | 1.67 | -1.65 | -- | -- | 0.119 | 4.49 | 21.46 | 22756 | -- | -- |
| 175.01 | 0.62 | 9.2 | -2.32 | -- | -1.06 | -- | -0.53 | -0.359 | -- | 27.01 | 1858 | -- | -- |
| 132.52 | 0.54 | 9.21 | -2.56 | 1.62 | -- | 1.27 | -- | -0.539 | 4.49 | -- | -- | -- | -- |
| 136.75 | 0.548 | 9.21 | -2.57 | 1.63 | -- | -- | -- | -0.546 | 4.6 | -- | -- | -- | -- |
| 175.69 | 0.62 | 9.19 | -2.22 | -- | -1.08 | -- | -- | -0.33 | -- | 27.01 | 1858 | -- | -- |
| 100.1 | 0.466 | 9.01 | -- | 1.67 | -2.25 | -- | -- | 0.326 | 4.52 | 19 | 47520 | -- | -- |
| 278.95 | 0.78 | 9.22 | -2.5 | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
| 310.43 | 0.824 | 9.15 | -- | 1.59 | -- | -- | -- | -0.26 | 4.64 | -- | -- | -- | -- |
| 247.2 | 0.732 | 9.03 | -- | -- | -2.17 | -- | -- | 0.346 | -- | 19.08 | 47520 | -- | -- |
| 444.36 | 0.984 | 9.16 | -- | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.47 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 20 |
| 2 | 79.54 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 18 |
| 8 | 79.94 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 22 |
| 35 | 80.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 38 | 80.69 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 40 | 80.70 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 44 | 80.78 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 66 | 81.05 | humidity | 80 | 43200 | > th | dose dependent | sin | 16 | NA |
| 78 | 81.20 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 104 | 81.56 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 121 | 81.78 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 135 | 81.95 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 145 | 82.06 | humidity | 90 | 43200 | > th | dose independent | sin | 14 | NA |
| 154 | 82.21 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 169 | 82.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 170 | 82.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 183 | 82.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 189 | 82.43 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 3 |
| 200 | 82.50 | humidity | 80 | 43200 | > th | dose dependent | sin | 4 | NA |
| 206 | 82.55 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 228 | 82.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 300 | 83.00 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 323 | 83.08 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 325 | 83.09 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 326 | 83.09 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 349 | 83.16 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 17 |
| 378 | 83.27 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 385 | 83.28 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 19 |
| 391 | 83.31 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 404 | 83.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 423 | 83.40 | radiation | 40 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 436 | 83.45 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 447 | 83.48 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 468 | 83.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 471 | 83.53 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 480 | 83.57 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 488 | 83.60 | radiation | 40 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 499 | 83.62 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 537 | 83.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 10 |
| 540 | 83.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 610 | 83.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 650 | 84.01 | humidity | 90 | 43200 | < th | dose independent | sin | 8 | NA |
| 656 | 84.03 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 683 | 84.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 21 |
| 778 | 84.30 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 781 | 84.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 809 | 84.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 837 | 84.42 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 866 | 84.52 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 886 | 84.57 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 990 | 84.81 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 22 |