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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0900400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipase, class 3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.17 (0.0436) R2 : 0.696
β1 : 2.05 (0.183) R2dD : 0.124 R2D : 0.0489
β2 : 2.95 (0.103) R2dC : 0.549 R2C : 0.535
β3 : 0.788 (0.162) R2dE : 0.0199 R2E : 0.0216
β4 : 2.45 (0.416) R2dD*C : 0.0233 R2D*C : 0.0124
β5 : 3.3 (0.679) R2dD*E : 0.0228 R2D*E : -0.05
γ1 : 0.42 (0.104) R2dN8 : 0.0197 R2N8 : 0.00556
σ : 0.79
deviance : 282.85
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_____
C
peak time of C : 9.28
E
wheather : radiation
threshold : 20.44
memory length : 5814
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
282.85 0.79 4.17 2.05 2.95 0.788 2.45 3.3 0.42 9.28 20.44 5814 -- --
298.66 0.805 4.17 1.81 3.06 0.784 2.55 -- 0.281 9.31 20.18 7203 -- --
303.78 0.812 4.17 2.14 2.94 0.807 -- 3.37 0.409 9.22 20.05 5877 -- --
319.12 0.832 4.19 1.75 3.02 0.757 -- -- 0.284 9.24 20.16 7200 -- --
693.86 1.23 4.22 1.52 -- 1.34 -- 1.26 0.51 -- 20.01 5927 -- --
319.34 0.838 4.15 1.65 2.95 -- 2.46 -- 0.506 9.24 -- -- -- --
340.86 0.865 4.15 1.74 2.95 -- -- -- 0.508 9.2 -- -- -- --
578.95 1.13 4.21 1.83 -- 1.56 -- -- 0.586 -- 5.623 5993 -- --
392.36 0.923 4.22 -- 2.92 0.781 -- -- 0.26 9.26 20.34 12967 -- --
844.09 1.36 4.23 1.73 -- -- -- -- 0.522 -- -- -- -- --
420.57 0.959 4.19 -- 2.95 -- -- -- 0.314 9.16 -- -- -- --
667.11 1.21 4.26 -- -- 1.53 -- -- 0.382 -- 5.623 5993 -- --
922.92 1.42 4.27 -- -- -- -- -- 0.331 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 275.56 radiation 10 14400 < th dose dependent rect. 13 1
2 276.79 wind 1 43200 < th dose dependent rect. 2 2
4 277.75 temperature 30 14400 > th dose independent rect. 16 1
5 278.13 radiation 10 14400 > th dose independent rect. 13 2
6 278.24 temperature 30 14400 < th dose independent rect. 16 1
7 278.34 temperature 30 14400 < th dose independent rect. 13 1
9 278.48 temperature 30 14400 > th dose independent rect. 12 5
10 278.50 temperature 30 14400 < th dose independent rect. 12 5
11 278.55 temperature 30 14400 < th dose independent rect. 12 3
14 278.61 temperature 30 14400 > th dose independent rect. 12 3
16 278.64 temperature 30 14400 < th dose independent rect. 8 9
17 278.64 temperature 30 14400 < th dose independent rect. 3 14
31 278.65 temperature 30 14400 > th dose dependent rect. 14 1
38 278.72 temperature 30 14400 > th dose independent rect. 8 9
54 278.76 temperature 25 14400 > th dose dependent rect. 7 2
75 278.84 temperature 30 14400 < th dose independent rect. 12 22
77 278.88 wind 1 43200 < th dose independent rect. 2 2
98 278.96 temperature 30 14400 > th dose independent rect. 12 22
118 279.00 temperature 30 14400 < th dose independent sin 1 NA
139 279.11 temperature 30 14400 > th dose independent sin 23 NA
193 279.18 temperature 30 14400 < th dose independent rect. 8 20
215 279.19 temperature 30 14400 < th dose independent no NA NA
283 279.20 temperature 30 14400 < th dose independent rect. 12 17
326 279.25 temperature 30 14400 > th dose independent no NA NA
451 279.27 atmosphere 1000 90 > th dose independent rect. 7 23
469 279.30 radiation 10 14400 > th dose independent rect. 11 5
499 279.35 temperature 30 14400 < th dose independent rect. 15 23
515 279.37 temperature 25 14400 > th dose independent rect. 6 1
517 279.38 temperature 30 14400 > th dose dependent rect. 12 3
556 279.44 temperature 30 14400 > th dose independent rect. 16 23
564 279.49 temperature 25 14400 < th dose independent rect. 6 1
631 279.83 humidity 80 43200 > th dose independent rect. 13 1
636 279.86 temperature 30 14400 > th dose dependent rect. 8 7
676 279.93 atmosphere 1000 10 > th dose independent rect. 24 17
753 280.21 wind 1 43200 > th dose independent rect. 2 2
780 280.29 temperature 25 14400 > th dose dependent rect. 24 12
783 280.32 temperature 30 14400 > th dose dependent sin 4 NA
953 280.60 temperature 30 14400 > th dose dependent rect. 11 22
971 280.62 radiation 10 14400 > th dose independent rect. 11 20