Os01g0899200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ERD3 protein.
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Os01g0899200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ERD3 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.53 | 0.445 | 9.53 | 0.127 | 1.64 | -0.873 | 0.715 | 0.968 | -0.621 | 23.5 | 9.878 | 1446 | -- | -- |
| 91.27 | 0.445 | 9.53 | 0.199 | 1.63 | -0.836 | 0.713 | -- | -0.599 | 23.5 | 10.1 | 1447 | -- | -- |
| 91.68 | 0.446 | 9.53 | 0.0874 | 1.65 | -0.9 | -- | 1.01 | -0.629 | 23.4 | 9.675 | 1448 | -- | -- |
| 93.55 | 0.45 | 9.53 | 0.199 | 1.62 | -0.865 | -- | -- | -0.6 | 23.4 | 10.01 | 1446 | -- | -- |
| 134.09 | 0.542 | 9.45 | 0.207 | -- | 1.2 | -- | 0.798 | -0.409 | -- | 9.675 | 1448 | -- | -- |
| 110.56 | 0.493 | 9.49 | 0.236 | 1.62 | -- | 0.923 | -- | -0.431 | 23.5 | -- | -- | -- | -- |
| 114.21 | 0.5 | 9.49 | 0.199 | 1.62 | -- | -- | -- | -0.434 | 23.5 | -- | -- | -- | -- |
| 134.47 | 0.54 | 9.43 | 0.211 | -- | 1.2 | -- | -- | -0.339 | -- | 8.144 | 36 | -- | -- |
| 94.26 | 0.452 | 9.53 | -- | 1.6 | -0.825 | -- | -- | -0.627 | 23.4 | 12.58 | 1436 | -- | -- |
| 278.17 | 0.779 | 9.46 | 0.242 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 115.26 | 0.502 | 9.5 | -- | 1.62 | -- | -- | -- | -0.456 | 23.5 | -- | -- | -- | -- |
| 135.34 | 0.542 | 9.44 | -- | -- | 1.21 | -- | -- | -0.355 | -- | 8.37 | 36 | -- | -- |
| 279.71 | 0.781 | 9.46 | -- | -- | -- | -- | -- | -0.444 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.69 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 2 | 86.96 | radiation | 10 | 1440 | > th | dose independent | sin | 11 | NA |
| 5 | 87.09 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 10 | 87.50 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 11 | 87.55 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 13 | 87.59 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 16 | 87.69 | radiation | 20 | 1440 | < th | dose dependent | sin | 12 | NA |
| 25 | 87.87 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 27 | 87.91 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 28 | 87.96 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 35 | 88.05 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 17 |
| 48 | 88.24 | radiation | 1 | 1440 | > th | dose dependent | sin | 12 | NA |
| 71 | 88.58 | radiation | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 76 | 88.63 | humidity | 70 | 1440 | < th | dose independent | sin | 11 | NA |
| 78 | 88.71 | humidity | 70 | 1440 | > th | dose independent | sin | 10 | NA |
| 111 | 89.17 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 122 | 89.26 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 146 | 89.41 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 148 | 89.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 151 | 89.43 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 158 | 89.44 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 19 |
| 159 | 89.45 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 184 | 89.50 | radiation | 10 | 1440 | < th | dose dependent | rect. | 24 | 18 |
| 218 | 89.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 241 | 89.56 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 246 | 89.56 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 283 | 89.66 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 16 |
| 369 | 90.17 | humidity | 80 | 1440 | < th | dose dependent | sin | 10 | NA |
| 472 | 90.31 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 488 | 90.33 | radiation | 10 | 1440 | < th | dose dependent | sin | 2 | NA |
| 489 | 90.33 | radiation | 20 | 1440 | < th | dose dependent | sin | 5 | NA |
| 493 | 90.34 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 505 | 90.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 513 | 90.39 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 519 | 90.40 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 527 | 90.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 580 | 90.53 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 587 | 90.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 614 | 90.56 | radiation | 30 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 618 | 90.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 620 | 90.57 | radiation | 30 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 701 | 90.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 874 | 91.03 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 891 | 91.05 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 955 | 91.16 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 959 | 91.17 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 1000 | 91.20 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 4 |