Os01g0899000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pti1 kinase-like protein.
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Os01g0899000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pti1 kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.24 | 0.236 | 9.85 | -0.351 | 0.511 | -1.2 | -0.288 | -0.78 | 0.0137 | 3.95 | 25 | 734 | -- | -- |
| 26.22 | 0.238 | 9.86 | -0.496 | 0.427 | -1.09 | -0.384 | -- | 0.0298 | 3.28 | 35.55 | 1184 | -- | -- |
| 25.47 | 0.235 | 9.85 | -0.35 | 0.511 | -1.21 | -- | -0.767 | 0.0118 | 4.07 | 25.09 | 731 | -- | -- |
| 26.2 | 0.238 | 9.86 | -0.494 | 0.515 | -1.13 | -- | -- | -0.0193 | 4.19 | 25.86 | 734 | -- | -- |
| 36.32 | 0.281 | 9.86 | -0.453 | -- | -1.27 | -- | -0.342 | 0.0092 | -- | 32.02 | 1146 | -- | -- |
| 45.12 | 0.315 | 9.82 | -0.174 | 0.543 | -- | -0.345 | -- | 0.222 | 2.8 | -- | -- | -- | -- |
| 45.53 | 0.316 | 9.82 | -0.165 | 0.542 | -- | -- | -- | 0.224 | 2.83 | -- | -- | -- | -- |
| 36.37 | 0.281 | 9.87 | -0.534 | -- | -1.27 | -- | -- | 0.00253 | -- | 32.85 | 1140 | -- | -- |
| 31.55 | 0.262 | 9.84 | -- | 0.697 | -1.03 | -- | -- | 0.0956 | 4.21 | 31.84 | 548 | -- | -- |
| 62.51 | 0.369 | 9.81 | -0.142 | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
| 46.25 | 0.318 | 9.81 | -- | 0.539 | -- | -- | -- | 0.243 | 2.83 | -- | -- | -- | -- |
| 42.49 | 0.304 | 9.84 | -- | -- | -1.04 | -- | -- | 0.107 | -- | 40.83 | 1130 | -- | -- |
| 63.05 | 0.371 | 9.81 | -- | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.88 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 3 | 20.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 14 |
| 8 | 20.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 15 | 20.57 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 26 | 20.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 74 | 21.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 98 | 21.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 128 | 22.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 749 | 25.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 771 | 25.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 815 | 25.25 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 1000 | 25.61 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 16 |