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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0898600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.83 (0.0463) R2 : 0.708
β1 : 3 (0.171) R2dD : 0.203 R2D : 0.213
β2 : 3.23 (0.138) R2dC : 0.459 R2C : 0.0663
β3 : 3.21 (0.149) R2dE : 0.389 R2E : 0.0227
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.553 (0.0995) R2dN8 : 0.0257 R2N8 : 0.0106
σ : 0.866
deviance : 345.9
__
_____
C
peak time of C : 5.28
E
wheather : temperature
threshold : 6.182
memory length : 179
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.98
open length of G : 17.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
352.51 0.882 5.85 2.86 3.33 3.23 -0.053 -0.752 0.435 5.71 8.07 257 2.16 17.9
347.59 0.868 5.82 3.06 3.14 3.06 0.222 -- 0.571 5.37 6.439 195 2.73 17
352.37 0.874 5.85 2.87 3.29 3.2 -- -0.722 0.444 5.68 7.647 249 2.18 17.9
345.9 0.866 5.83 3 3.23 3.21 -- -- 0.553 5.28 6.182 179 2.98 17.1
623.64 1.17 5.85 3.25 -- 1.91 -- -0.303 0.712 -- -8.689 111 2.15 16.1
474.07 1.02 5.76 3.4 2.65 -- -0.556 -- 0.783 8.29 -- -- -- --
475.03 1.02 5.76 3.38 2.65 -- -- -- 0.784 8.29 -- -- -- --
411.84 0.945 5.89 3.15 -- 3.2 -- -- 0.547 -- 7.612 398 0.15 8.62
561.31 1.1 5.93 -- 3.63 3.97 -- -- 0.104 5.17 12.3 185 2.92 17.1
864.84 1.37 5.83 3.4 -- -- -- -- 0.813 -- -- -- -- --
776.11 1.3 5.85 -- 2.67 -- -- -- 0.407 8.2 -- -- -- --
636.26 1.17 6.14 -- -- 3.75 -- -- -0.28 -- 15.56 632 0.133 5.82
1169.31 1.6 5.91 -- -- -- -- -- 0.436 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 353.51 temperature 10.0 270 > th dose dependent rect. 2 18
26 372.64 temperature 30.0 270 < th dose independent rect. 6 20
34 374.73 radiation 30.0 90 < th dose dependent rect. 3 6
36 375.25 radiation 20.0 90 < th dose independent rect. 3 6
41 375.77 temperature 30.0 270 < th dose dependent rect. 6 19
43 375.89 temperature 30.0 270 < th dose independent rect. 7 18
66 378.97 radiation 30.0 90 < th dose dependent rect. 3 8
67 379.12 humidity 60.0 90 > th dose dependent rect. 3 6
69 379.71 humidity 50.0 270 > th dose independent rect. 6 20
84 381.02 humidity 50.0 270 > th dose independent rect. 5 22
87 381.18 humidity 60.0 90 > th dose dependent rect. 3 8
99 381.86 radiation 10.0 270 < th dose independent rect. 1 6
107 382.27 humidity 70.0 90 > th dose independent rect. 3 5
111 382.32 radiation 1.0 270 < th dose independent rect. 2 9
112 382.34 humidity 80.0 270 > th dose independent rect. 1 6
113 382.34 radiation 30.0 10 < th dose dependent rect. 4 5
116 382.44 wind 1.0 270 > th dose independent rect. 3 2
124 382.98 humidity 50.0 270 > th dose independent rect. 7 18
125 383.02 radiation 1.0 270 < th dose independent rect. 3 2
127 383.05 radiation 10.0 270 < th dose dependent rect. 3 2
135 383.18 wind 7.0 270 < th dose independent rect. 3 2
140 383.26 temperature 10.0 270 > th dose dependent rect. 3 2
149 383.47 temperature 10.0 270 > th dose independent rect. 3 2
151 383.47 temperature 30.0 270 < th dose independent rect. 3 2
152 383.47 humidity 50.0 270 > th dose independent rect. 3 2
155 383.47 atmosphere 995.0 270 > th dose independent rect. 3 2
156 383.47 atmosphere 1010.0 270 < th dose independent rect. 3 2
161 383.47 temperature 10.0 270 > th dose independent rect. 5 22
175 384.10 radiation 20.0 90 < th dose independent rect. 3 8
176 384.13 radiation 20.0 90 < th dose dependent rect. 3 10
180 384.37 atmosphere 1010.0 270 < th dose independent rect. 2 4
181 384.39 humidity 50.0 270 > th dose dependent rect. 1 6
182 384.44 radiation 1.0 270 < th dose dependent rect. 3 8
187 384.52 wind 9.0 270 < th dose independent rect. 5 22
190 384.55 temperature 10.0 270 > th dose dependent rect. 2 4
197 384.66 humidity 50.0 270 > th dose dependent rect. 3 2
208 385.06 wind 7.0 270 < th dose independent rect. 2 4
211 385.24 temperature 10.0 270 > th dose dependent rect. 11 10
221 385.52 wind 9.0 270 < th dose independent rect. 6 20
223 385.61 temperature 10.0 270 > th dose independent rect. 2 4
225 385.61 temperature 30.0 270 < th dose independent rect. 2 4
226 385.61 humidity 50.0 270 > th dose independent rect. 2 4
229 385.61 atmosphere 995.0 270 > th dose independent rect. 2 4
234 385.61 temperature 10.0 270 > th dose independent rect. 6 20
242 385.83 radiation 1.0 270 < th dose dependent rect. 12 14
255 386.30 wind 9.0 270 < th dose independent rect. 6 9
269 386.48 atmosphere 1010.0 270 < th dose independent rect. 1 6
270 386.48 radiation 1.0 270 < th dose dependent rect. 17 9
271 386.49 wind 7.0 270 < th dose independent rect. 1 6
275 386.54 precipitation 0.1 270 < th dose independent rect. 3 2
276 386.54 precipitation 0.1 270 < th dose dependent rect. 3 2
289 386.80 radiation 1.0 270 < th dose independent rect. 12 14
292 386.81 precipitation 0.1 270 < th dose independent rect. 5 22
293 386.81 precipitation 0.1 270 < th dose dependent rect. 5 22
295 386.86 humidity 70.0 270 > th dose independent rect. 18 8
304 387.01 wind 9.0 270 < th dose independent rect. 7 18
306 387.02 radiation 40.0 30 < th dose dependent rect. 4 16
307 387.03 humidity 50.0 90 > th dose dependent rect. 3 11
310 387.09 temperature 15.0 270 > th dose independent rect. 6 9
314 387.13 precipitation 0.1 270 < th dose independent rect. 6 20
315 387.13 precipitation 0.1 270 < th dose dependent rect. 6 20
316 387.14 temperature 10.0 270 > th dose independent rect. 1 6
318 387.14 temperature 30.0 270 < th dose independent rect. 1 6
319 387.14 humidity 50.0 270 > th dose independent rect. 1 6
321 387.14 atmosphere 995.0 270 > th dose independent rect. 1 6
324 387.14 temperature 10.0 270 > th dose independent rect. 7 18
332 387.33 precipitation 0.1 270 < th dose independent rect. 2 4
333 387.33 radiation 1.0 270 < th dose independent rect. 17 9
334 387.33 precipitation 0.1 270 < th dose dependent rect. 2 4
337 387.35 temperature 10.0 270 > th dose dependent rect. 1 6
350 387.57 atmosphere 1015.0 270 < th dose dependent rect. 3 2
355 387.64 wind 9.0 270 < th dose independent rect. 15 15
366 387.94 radiation 40.0 270 < th dose independent rect. 15 15
369 387.99 precipitation 0.1 270 < th dose independent rect. 6 9
370 387.99 precipitation 0.1 270 < th dose dependent rect. 6 9
383 388.22 atmosphere 995.0 270 > th dose independent rect. 6 20
390 388.37 atmosphere 995.0 270 > th dose independent rect. 6 9
402 388.73 atmosphere 1015.0 270 < th dose independent rect. 6 9
403 388.73 temperature 10.0 270 > th dose independent rect. 15 15
407 388.79 wind 9.0 270 < th dose dependent rect. 2 4
410 388.83 precipitation 0.1 270 < th dose independent rect. 7 18
411 388.83 precipitation 0.1 270 < th dose dependent rect. 7 18
417 388.95 radiation 30.0 10 < th dose dependent rect. 4 7
419 389.04 precipitation 0.1 270 < th dose independent rect. 1 6
420 389.04 precipitation 0.1 270 < th dose dependent rect. 1 6
422 389.17 wind 9.0 270 < th dose dependent rect. 3 2
429 389.26 radiation 20.0 90 < th dose independent rect. 3 17
430 389.27 radiation 30.0 10 < th dose dependent rect. 4 10
453 389.60 atmosphere 995.0 270 > th dose independent rect. 7 18
455 389.65 temperature 30.0 270 < th dose independent rect. 18 8
467 389.93 humidity 80.0 90 > th dose independent rect. 3 8
482 390.13 atmosphere 1010.0 90 < th dose independent rect. 3 6
501 390.48 wind 9.0 90 < th dose independent rect. 20 7
509 390.60 temperature 30.0 270 < th dose independent rect. 6 9
513 390.63 temperature 10.0 90 > th dose independent rect. 20 7
514 390.63 temperature 30.0 90 < th dose independent rect. 20 7
515 390.63 humidity 50.0 90 > th dose independent rect. 20 7
518 390.63 atmosphere 995.0 90 > th dose independent rect. 20 7
519 390.63 radiation 1.0 90 < th dose independent rect. 20 7
524 390.63 temperature 10.0 90 > th dose independent rect. 3 17
525 390.63 atmosphere 1015.0 90 < th dose independent rect. 3 17
526 390.63 radiation 1.0 90 < th dose dependent rect. 20 7
532 390.68 precipitation 0.1 90 < th dose independent rect. 20 7
533 390.68 precipitation 0.1 90 < th dose dependent rect. 20 7
542 390.88 precipitation 0.1 90 < th dose independent rect. 3 17
543 390.88 precipitation 0.1 90 < th dose dependent rect. 3 17
546 390.95 radiation 40.0 90 < th dose independent rect. 3 17
589 391.30 temperature 30.0 720 < th dose dependent rect. 5 4
606 391.57 wind 9.0 90 < th dose independent rect. 3 17
620 391.58 temperature 10.0 720 > th dose dependent rect. 1 13
623 391.60 atmosphere 1015.0 270 < th dose dependent rect. 2 4
653 392.07 atmosphere 995.0 270 > th dose independent rect. 5 22
660 392.10 temperature 20.0 720 > th dose dependent rect. 23 15
665 392.19 wind 9.0 270 < th dose dependent rect. 1 6
668 392.21 wind 9.0 90 < th dose dependent rect. 20 7
692 392.32 precipitation 0.1 270 < th dose independent rect. 15 15
693 392.32 precipitation 0.1 270 < th dose dependent rect. 15 15
706 392.45 humidity 70.0 10 > th dose independent rect. 4 5
740 392.78 wind 1.0 270 > th dose independent rect. 1 5
752 392.91 temperature 20.0 720 > th dose dependent rect. 1 12
777 393.20 temperature 10.0 1440 > th dose independent rect. 21 8
780 393.20 temperature 30.0 1440 < th dose independent rect. 21 8
784 393.20 humidity 50.0 1440 > th dose independent rect. 21 8
790 393.20 atmosphere 995.0 1440 > th dose independent rect. 21 8
791 393.20 radiation 20.0 1440 < th dose independent rect. 21 8
803 393.20 temperature 10.0 1440 > th dose independent rect. 5 16
833 393.42 wind 9.0 4320 < th dose independent rect. 5 3
882 393.82 radiation 1.0 270 > th dose independent rect. 6 9
949 394.38 temperature 10.0 720 > th dose dependent rect. 23 15