Os01g0898300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os01g0898300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.96 | 0.225 | 10.6 | -0.153 | 0.739 | -0.506 | -0.0311 | -0.801 | 0.184 | 5.52 | 0.5529 | 272 | -- | -- |
| 24.05 | 0.228 | 10.6 | -0.151 | 0.756 | -0.469 | 0.286 | -- | 0.187 | 5.42 | -1.068 | 273 | -- | -- |
| 22.96 | 0.223 | 10.6 | -0.153 | 0.739 | -0.505 | -- | -0.787 | 0.184 | 5.52 | 0.5399 | 271 | -- | -- |
| 24.24 | 0.229 | 10.6 | -0.15 | 0.75 | -0.486 | -- | -- | 0.188 | 5.48 | 0.3796 | 273 | -- | -- |
| 33.71 | 0.27 | 10.6 | -0.112 | -- | -1.14 | -- | -0.66 | 0.259 | -- | -15.24 | 476 | -- | -- |
| 26.7 | 0.242 | 10.6 | -0.167 | 0.993 | -- | 0.372 | -- | 0.154 | 4.62 | -- | -- | -- | -- |
| 27.07 | 0.244 | 10.6 | -0.169 | 0.995 | -- | -- | -- | 0.152 | 4.64 | -- | -- | -- | -- |
| 34.3 | 0.273 | 10.6 | -0.0953 | -- | -1.15 | -- | -- | 0.264 | -- | -0.0004948 | 492 | -- | -- |
| 24.83 | 0.232 | 10.6 | -- | 0.742 | -0.504 | -- | -- | 0.204 | 5.55 | -6.873 | 275 | -- | -- |
| 79.75 | 0.417 | 10.6 | -0.131 | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
| 27.82 | 0.247 | 10.6 | -- | 0.992 | -- | -- | -- | 0.171 | 4.64 | -- | -- | -- | -- |
| 34.51 | 0.274 | 10.6 | -- | -- | -1.15 | -- | -- | 0.278 | -- | -0.6723 | 497 | -- | -- |
| 80.2 | 0.418 | 10.6 | -- | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.15 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 8 | 21.38 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 20 |
| 9 | 21.40 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 12 | 21.44 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 13 | 21.44 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 32 | 21.59 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 33 | 21.60 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 46 | 21.72 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 55 | 21.79 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 20 |
| 56 | 21.79 | temperature | 25.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 58 | 21.80 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 20 |
| 62 | 21.82 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 17 |
| 63 | 21.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 71 | 21.85 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 5 |
| 74 | 21.86 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 85 | 21.89 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 95 | 21.92 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 100 | 21.93 | temperature | 25.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 111 | 21.94 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 24 | 12 |
| 179 | 22.08 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 17 |
| 196 | 22.13 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 4 | 19 |
| 211 | 22.17 | humidity | 80.0 | 90 | > th | dose independent | rect. | 4 | 19 |
| 222 | 22.19 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 282 | 22.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 321 | 22.34 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 19 |
| 341 | 22.36 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 355 | 22.38 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 11 |
| 356 | 22.38 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 357 | 22.38 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 16 |
| 370 | 22.40 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 20 |
| 375 | 22.41 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 394 | 22.43 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 417 | 22.47 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 9 |
| 463 | 22.52 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 11 |
| 516 | 22.59 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 527 | 22.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 6 |
| 528 | 22.60 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 530 | 22.60 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 531 | 22.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 539 | 22.61 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 17 |
| 540 | 22.61 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 543 | 22.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 544 | 22.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 545 | 22.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 546 | 22.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 549 | 22.62 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 550 | 22.62 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 561 | 22.62 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 571 | 22.62 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 573 | 22.62 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 588 | 22.64 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 653 | 22.72 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 666 | 22.73 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 689 | 22.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 4 |
| 690 | 22.75 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 693 | 22.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 4 |
| 706 | 22.76 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 710 | 22.76 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 725 | 22.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 4 |
| 726 | 22.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 727 | 22.77 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 4 |
| 728 | 22.77 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 731 | 22.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 732 | 22.77 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 4 |
| 741 | 22.77 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 4 |
| 768 | 22.78 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 776 | 22.79 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 777 | 22.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 779 | 22.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 787 | 22.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 799 | 22.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 20 |
| 800 | 22.80 | radiation | 1.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 801 | 22.80 | radiation | 10.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 819 | 22.81 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 823 | 22.82 | radiation | 40.0 | 270 | > th | dose independent | rect. | 14 | 21 |
| 843 | 22.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 859 | 22.85 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 17 |
| 899 | 22.87 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 22 | 19 |
| 904 | 22.88 | radiation | 1.0 | 270 | < th | dose independent | sin | 0 | NA |
| 942 | 22.90 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 943 | 22.90 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 944 | 22.90 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 951 | 22.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 18 |
| 958 | 22.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 960 | 22.90 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 964 | 22.91 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 966 | 22.91 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 9 |
| 996 | 22.92 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 998 | 22.92 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 7 | 11 |