Os01g0897800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rad21/Rec8 like protein, N-terminal domain containing protein.
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Os01g0897800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rad21/Rec8 like protein, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.41 | 0.202 | 11.5 | 1.22 | 0.202 | -0.344 | -0.114 | 1.62 | 0.375 | 6.5 | 20.02 | 1560 | -- | -- |
| 19.96 | 0.21 | 11.6 | 0.738 | 0.198 | -0.462 | -0.0906 | -- | 0.257 | 9.58 | 18.08 | 18944 | -- | -- |
| 18.44 | 0.2 | 11.5 | 1.22 | 0.2 | -0.347 | -- | 1.63 | 0.377 | 6.5 | 20.1 | 1578 | -- | -- |
| 19.8 | 0.207 | 11.5 | 0.991 | 0.208 | -0.461 | -- | -- | 0.356 | 6.42 | 8.514 | 18946 | -- | -- |
| 20.08 | 0.209 | 11.5 | 1.27 | -- | -0.394 | -- | 1.85 | 0.399 | -- | 20.58 | 1894 | -- | -- |
| 22.88 | 0.224 | 11.6 | 0.637 | 0.208 | -- | -0.114 | -- | 0.18 | 6.59 | -- | -- | -- | -- |
| 22.91 | 0.224 | 11.6 | 0.635 | 0.207 | -- | -- | -- | 0.181 | 6.57 | -- | -- | -- | -- |
| 21.97 | 0.218 | 11.5 | 1 | -- | -0.47 | -- | -- | 0.361 | -- | 8.415 | 19403 | -- | -- |
| 28.78 | 0.25 | 11.6 | -- | 0.211 | 0.314 | -- | -- | -0.011 | 6.65 | 25.7 | 47520 | -- | -- |
| 25.15 | 0.234 | 11.6 | 0.64 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 33.55 | 0.271 | 11.6 | -- | 0.216 | -- | -- | -- | 0.11 | 6.4 | -- | -- | -- | -- |
| 31.09 | 0.26 | 11.6 | -- | -- | 0.317 | -- | -- | -0.00926 | -- | 25.6 | 47520 | -- | -- |
| 35.97 | 0.28 | 11.6 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 4 | 17.74 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 5 | 17.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 7 | 17.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 12 | 17.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 13 | 17.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 20 | 17.82 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 21 | 17.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 13 |
| 27 | 17.84 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 34 | 17.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 66 | 17.89 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 122 | 17.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 131 | 17.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 155 | 18.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 158 | 18.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 164 | 18.00 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 165 | 18.01 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 194 | 18.03 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 234 | 18.06 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 246 | 18.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 281 | 18.10 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 307 | 18.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 339 | 18.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 358 | 18.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 376 | 18.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 387 | 18.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 390 | 18.17 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 421 | 18.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 463 | 18.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 469 | 18.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 485 | 18.23 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 486 | 18.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 487 | 18.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 502 | 18.24 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 507 | 18.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 511 | 18.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 514 | 18.24 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 547 | 18.26 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 589 | 18.28 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 623 | 18.30 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 651 | 18.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 653 | 18.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 654 | 18.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 655 | 18.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 656 | 18.31 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 664 | 18.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 678 | 18.32 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 692 | 18.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 695 | 18.33 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 697 | 18.33 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 732 | 18.34 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 759 | 18.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 816 | 18.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 821 | 18.37 | wind | 9 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 839 | 18.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 842 | 18.37 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 845 | 18.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 862 | 18.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 870 | 18.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 871 | 18.39 | humidity | 80 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 880 | 18.39 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 898 | 18.40 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 900 | 18.40 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 909 | 18.40 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 7 |
| 923 | 18.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 942 | 18.41 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 949 | 18.41 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 11 |
| 966 | 18.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 991 | 18.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 22 |