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Os01g0897500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.79 (0.0179) R2 : 0.498
β1 : 1.37 (0.0656) R2dD : 0.496 R2D : 0.399
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.314 (0.0382) R2dN8 : 0.0996 R2N8 : 0.00269
σ : 0.336
deviance : 51.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.08 0.282 9.79 1.42 0.0184 0.787 -0.815 1.21 0.243 8.51 17.06 10 -- --
36.66 0.284 9.81 1.23 0.0526 0.784 -0.825 -- 0.187 6.73 18.9 7 -- --
37.5 0.287 9.81 1.29 0.117 0.882 -- 0.678 0.2 3.14 18.5 7 -- --
37.87 0.287 9.82 1.18 0.125 0.901 -- -- 0.168 2.85 18.8 5 -- --
37.95 0.287 9.8 1.33 -- 0.761 -- 0.689 0.222 -- 18.6 5 -- --
48.83 0.328 9.79 1.37 0.135 -- 0.851 -- 0.314 17.1 -- -- -- --
49.25 0.329 9.78 1.37 0.201 -- -- -- 0.319 13.9 -- -- -- --
38.43 0.289 9.81 1.21 -- 0.783 -- -- 0.189 -- 18.8 5 -- --
71.16 0.393 9.86 -- 0.3 1.42 -- -- -0.033 2.8 17.6 13 -- --
51.7 0.336 9.79 1.37 -- -- -- -- 0.314 -- -- -- -- --
99.06 0.466 9.82 -- 0.176 -- -- -- 0.166 13.7 -- -- -- --
74.7 0.403 9.85 -- -- 1.14 -- -- 0.0115 -- 17.5 17 -- --
100.94 0.469 9.82 -- -- -- -- -- 0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.03 temperature 15 90 > th dose dependent sin 5 NA
26 33.95 temperature 30 90 < th dose dependent sin 5 NA
30 34.16 temperature 30 270 < th dose dependent sin 7 NA
46 34.43 temperature 15 270 > th dose dependent rect. 17 22
53 34.49 temperature 25 270 < th dose dependent rect. 24 21
58 34.65 temperature 20 270 > th dose dependent rect. 19 19
59 34.65 temperature 20 90 > th dose dependent rect. 19 22
61 34.70 temperature 15 270 > th dose dependent rect. 21 14
87 35.04 temperature 30 270 < th dose dependent rect. 23 10
95 35.15 temperature 20 10 > th dose dependent rect. 22 18
96 35.17 temperature 20 4320 > th dose independent rect. 20 3
98 35.18 temperature 20 270 > th dose independent rect. 5 22
100 35.19 temperature 20 4320 < th dose independent rect. 20 3
115 35.32 temperature 20 270 > th dose independent rect. 21 14
127 35.37 temperature 30 10 < th dose dependent rect. 1 23
128 35.38 temperature 20 270 > th dose independent rect. 21 16
130 35.38 temperature 20 10 > th dose dependent rect. 20 20
132 35.39 temperature 30 270 < th dose dependent rect. 1 8
139 35.45 temperature 20 4320 < th dose independent rect. 18 5
155 35.52 temperature 20 4320 > th dose independent rect. 21 1
157 35.53 temperature 20 270 < th dose independent rect. 24 22
159 35.54 temperature 20 4320 < th dose independent rect. 14 9
178 35.61 temperature 20 4320 > th dose independent rect. 18 5
185 35.63 temperature 20 4320 > th dose independent rect. 14 9
212 35.74 temperature 30 10 < th dose dependent rect. 3 23
249 35.89 temperature 20 270 > th dose independent rect. 18 22
255 35.91 temperature 20 720 > th dose independent sin 22 NA
312 36.08 temperature 25 270 < th dose dependent rect. 12 21
326 36.11 temperature 10 270 > th dose dependent rect. 6 21
337 36.16 temperature 15 10 > th dose dependent no NA NA
409 36.34 temperature 30 90 < th dose dependent rect. 3 16
414 36.36 temperature 20 1440 > th dose independent rect. 18 12
415 36.36 temperature 20 720 > th dose independent rect. 5 18
417 36.36 temperature 20 10 > th dose dependent rect. 7 23
422 36.38 temperature 30 90 < th dose dependent rect. 3 14
425 36.40 temperature 20 270 > th dose independent sin 6 NA
444 36.42 temperature 20 10 > th dose dependent rect. 17 23
465 36.47 temperature 20 270 < th dose independent sin 7 NA
470 36.47 temperature 15 90 > th dose dependent rect. 7 23
476 36.49 temperature 20 10 > th dose dependent rect. 9 23
481 36.51 temperature 30 90 < th dose dependent rect. 3 8
484 36.51 temperature 30 10 < th dose dependent rect. 13 23
513 36.59 temperature 20 720 > th dose independent rect. 18 16
530 36.62 temperature 20 1440 < th dose independent rect. 19 11
533 36.62 temperature 20 10 > th dose dependent rect. 15 23
550 36.66 temperature 20 10 > th dose dependent rect. 9 21
570 36.69 temperature 30 10 < th dose dependent no NA NA
582 36.71 temperature 30 90 < th dose dependent rect. 3 12
623 36.77 temperature 30 10 < th dose dependent rect. 15 23
624 36.78 temperature 20 1440 > th dose independent sin 13 NA
674 36.83 temperature 30 10 < th dose dependent rect. 21 23
705 36.87 temperature 20 720 < th dose independent rect. 5 18
723 36.90 temperature 20 720 > th dose independent rect. 15 19
745 36.93 temperature 20 270 < th dose independent rect. 15 18
749 36.93 temperature 20 270 < th dose independent rect. 12 21
763 36.94 temperature 20 10 > th dose dependent rect. 23 23
765 36.94 temperature 25 270 < th dose dependent rect. 15 23
792 36.96 temperature 25 270 < th dose dependent rect. 17 23
793 36.97 temperature 20 270 < th dose independent rect. 23 10
825 36.98 temperature 30 10 < th dose dependent rect. 17 23
826 36.99 temperature 20 270 < th dose independent no NA NA
932 37.05 temperature 20 10 > th dose dependent rect. 13 23
951 37.07 temperature 20 720 < th dose independent sin 22 NA
970 37.08 temperature 20 1440 < th dose independent sin 13 NA
981 37.08 temperature 30 30 < th dose dependent rect. 9 23