Os01g0897000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0897000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.88 | 0.315 | 10.8 | -0.189 | 0.366 | 0.759 | -0.135 | 0.445 | -0.024 | 21.2 | 21.4 | 2527 | -- | -- |
| 45.23 | 0.313 | 10.8 | -0.238 | 0.37 | 0.673 | -0.0815 | -- | -0.031 | 21 | 22 | 2474 | -- | -- |
| 44.94 | 0.312 | 10.8 | -0.189 | 0.366 | 0.759 | -- | 0.429 | -0.0252 | 21.1 | 21.43 | 2529 | -- | -- |
| 45.16 | 0.313 | 10.8 | -0.226 | 0.373 | 0.65 | -- | -- | -0.036 | 21.1 | 22.03 | 2478 | -- | -- |
| 52.27 | 0.337 | 10.8 | -0.195 | -- | 0.783 | -- | 0.404 | -0.04 | -- | 21.58 | 2356 | -- | -- |
| 59.7 | 0.362 | 10.8 | 0.0555 | 0.403 | -- | -0.114 | -- | 0.172 | 21.6 | -- | -- | -- | -- |
| 59.75 | 0.362 | 10.8 | 0.06 | 0.404 | -- | -- | -- | 0.172 | 21.6 | -- | -- | -- | -- |
| 52.66 | 0.338 | 10.8 | -0.235 | -- | 0.705 | -- | -- | -0.0545 | -- | 22.02 | 2358 | -- | -- |
| 46.34 | 0.317 | 10.8 | -- | 0.378 | 0.571 | -- | -- | -0.00711 | 21.1 | 22.33 | 2473 | -- | -- |
| 69.39 | 0.389 | 10.8 | 0.0632 | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
| 59.84 | 0.362 | 10.8 | -- | 0.404 | -- | -- | -- | 0.165 | 21.6 | -- | -- | -- | -- |
| 53.92 | 0.342 | 10.8 | -- | -- | 0.614 | -- | -- | -0.0315 | -- | 22.31 | 2340 | -- | -- |
| 69.49 | 0.389 | 10.8 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 6 | 43.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 14 | 43.44 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 16 | 43.46 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 20 | 43.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 25 | 43.56 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 38 | 43.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 16 |
| 53 | 43.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 62 | 43.85 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 199 | 44.77 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 203 | 44.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 212 | 44.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 232 | 44.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 251 | 44.97 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 255 | 44.98 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 258 | 44.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 259 | 44.99 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 260 | 44.99 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 266 | 45.01 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 296 | 45.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 308 | 45.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 325 | 45.12 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 400 | 45.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 430 | 45.26 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 467 | 45.31 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 556 | 45.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 623 | 45.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 709 | 45.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 928 | 45.58 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 945 | 45.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |